Guide to the Human Genome
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Name: EIF2C1 Sequence: fasta or formatted (857aa) NCBI GI: 6912352
Description:

eukaryotic translation initiation factor 2C, 1

Referenced in:

RNases and RNA Stability
Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         56           3
 C cysteine            2.3         20           1
 D aspartate           4.7         40           2
 E glutamate           4.8         41           2
 F phenylalanine       3.9         33           2
 G glycine             6.4         55           3
 H histidine           2.9         25           2
 I isoleucine          6.5         56           2
 K lysine              6.4         55           2
 L leucine             7.1         61           2
 M methionine          2.3         20           2
 N asparagine          3.2         27           2
 P proline             6.7         57           2
 Q glutamine           6.4         55           2
 R arginine            6.4         55           2
 S serine              4.4         38           1
 T threonine           5.4         46           2
 V valine              8.3         71           2
 W tryptophan          0.8          7           1
 Y tyrosine            4.6         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 2C, 1 
EIF2C3                0.853   eukaryotic translation initiation factor 2C, 3 isofo...
EIF2C4                0.838   eukaryotic translation initiation factor 2C, 4 [Homo...
EIF2C2                0.837   eukaryotic translation initiation factor 2C, 2 [Homo...
EIF2C3                0.664   eukaryotic translation initiation factor 2C, 3 isofo...
PIWIL4                0.085   piwi-like 4 
PIWIL1                0.080   piwi-like 1 
PIWIL2                0.076   piwi-like 2 
PIWIL2                0.076   piwi-like 2 
PIWIL3                0.070   piwi-like 3 
LOC652554             0.020   PREDICTED: similar to piwi like homolog 2 
CHD8                  0.004   chromodomain helicase DNA binding protein 8 
ITIH3                 0.003   inter-alpha (globulin) inhibitor H3 preproprotein [...
LOC100133655          0.003   PREDICTED: hypothetical protein 
VPS41                 0.003   vacuolar protein sorting 41 isoform 2 
VPS41                 0.003   vacuolar protein sorting 41 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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