Guide to the Human Genome
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Name: RREB1 Sequence: fasta or formatted (1687aa) NCBI GI: 51173735
Description:

ras responsive element binding protein 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1742aa} ras responsive element binding protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1        170           4
 C cysteine            3.0         50           2
 D aspartate           4.9         83           3
 E glutamate           7.6        129           3
 F phenylalanine       2.5         43           1
 G glycine             6.6        112           3
 H histidine           3.9         65           2
 I isoleucine          3.2         54           2
 K lysine              6.8        114           2
 L leucine             8.3        140           3
 M methionine          1.7         28           2
 N asparagine          2.5         42           2
 P proline             9.5        160           4
 Q glutamine           4.5         76           2
 R arginine            4.9         83           3
 S serine              9.6        162           3
 T threonine           5.6         95           2
 V valine              3.7         62           2
 W tryptophan          0.2          4           1
 Y tyrosine            0.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ras responsive element binding protein 1 isoform 2 [... 
RREB1                 0.987   ras responsive element binding protein 1 isoform 1 [...
ZNF235                0.025   zinc finger protein 93 homolog 
ZNF629                0.025   zinc finger protein 629 
ZNF665                0.024   zinc finger protein 665 
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.024   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.024   zinc finger protein 84 
ZNF84                 0.024   zinc finger protein 84 
ZNF561                0.024   zinc finger protein 561 
ZNF92                 0.024   zinc finger protein 92 isoform 1 
ZNF319                0.024   zinc finger protein 319 
ZNF92                 0.024   zinc finger protein 92 isoform 2 
ZNF347                0.023   zinc finger protein 347 
ZNF544                0.023   zinc finger protein 544 
ZNF470                0.023   zinc finger protein 470 
ZNF221                0.023   zinc finger protein 221 
ZNF250                0.023   zinc finger protein 250 isoform b 
ZNF250                0.023   zinc finger protein 250 isoform a 
ZNF546                0.023   zinc finger protein 546 
ZNF600                0.023   zinc finger protein 600 
ZNF93                 0.023   zinc finger protein 93 
ZNF799                0.023   zinc finger protein 799 
ZNF268                0.023   zinc finger protein 268 
ZNF33A                0.023   zinc finger protein 33A isoform b 
ZNF33A                0.023   zinc finger protein 33A isoform a 
ZNF23                 0.023   zinc finger protein 23 
ZNF418                0.023   zinc finger protein 418 
ZNF74                 0.023   zinc finger protein 74 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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