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Search of human proteins with 153791893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
(1171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 2352 0.0
gi|4759258 zinc finger, BED-type containing 1 [Homo sapiens] 143 1e-33
gi|124286830 zinc finger protein 618 [Homo sapiens] 45 4e-04
gi|56790947 zinc finger, BED domain containing 2 [Homo sapiens] 44 0.001
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 40 0.017
gi|19923961 hypothetical protein LOC113763 [Homo sapiens] 38 0.049
gi|48762709 SAM domain, SH3 domain and nuclear localization sign... 37 0.084
gi|139948432 adlican [Homo sapiens] 37 0.14
gi|55749621 pleckstrin homology domain containing, family G, mem... 36 0.25
gi|224591404 cancer/testis antigen family 147, member B1 [Homo s... 35 0.32
gi|4506453 retinol-binding protein 3 precursor [Homo sapiens] 35 0.42
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 35 0.42
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.42
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.42
gi|7657455 pescadillo homolog 1, containing BRCT domain [Homo sa... 34 0.71
gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens] 34 0.71
gi|51317366 myosin XVIIIB [Homo sapiens] 34 0.71
gi|150010604 kinesin family member 4B [Homo sapiens] 34 0.93
gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens] 34 0.93
gi|33946313 ninein isoform 4 [Homo sapiens] 34 0.93
gi|33946321 ninein isoform 5 [Homo sapiens] 34 0.93
gi|148536871 ninein isoform 1 [Homo sapiens] 34 0.93
gi|148536869 ninein isoform 2 [Homo sapiens] 34 0.93
gi|221219020 NYD-SP11 protein [Homo sapiens] 33 1.2
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 33 1.6
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 33 1.6
gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo ... 33 2.1
gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Ho... 33 2.1
gi|153218595 breast carcinoma amplified sequence 3 isoform 2 [Ho... 33 2.1
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 33 2.1
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 2352 bits (6096), Expect = 0.0
Identities = 1171/1171 (100%), Positives = 1171/1171 (100%)
Query: 1 MENNLKTCPKEDGDFVSDKIKFKIEEEDDDGIPPDSLERMDFKSEQEDMKQTDSGGERAG 60
MENNLKTCPKEDGDFVSDKIKFKIEEEDDDGIPPDSLERMDFKSEQEDMKQTDSGGERAG
Sbjct: 1 MENNLKTCPKEDGDFVSDKIKFKIEEEDDDGIPPDSLERMDFKSEQEDMKQTDSGGERAG 60
Query: 61 LGGTGCSCKPPGKYLSAESEDDYGALFSQYSSTLYDVAMEAVTQSLLSSRNMSSRKKSPA 120
LGGTGCSCKPPGKYLSAESEDDYGALFSQYSSTLYDVAMEAVTQSLLSSRNMSSRKKSPA
Sbjct: 61 LGGTGCSCKPPGKYLSAESEDDYGALFSQYSSTLYDVAMEAVTQSLLSSRNMSSRKKSPA 120
Query: 121 WKHFFISPRDSTKAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHPTVLIQENGSVSAVS 180
WKHFFISPRDSTKAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHPTVLIQENGSVSAVS
Sbjct: 121 WKHFFISPRDSTKAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHPTVLIQENGSVSAVS 180
Query: 181 SFPSPSLLLPPQPADAGDLSTILSPIKLVQKVASKIPSPDRITEESVSVVSSEEISSDMS 240
SFPSPSLLLPPQPADAGDLSTILSPIKLVQKVASKIPSPDRITEESVSVVSSEEISSDMS
Sbjct: 181 SFPSPSLLLPPQPADAGDLSTILSPIKLVQKVASKIPSPDRITEESVSVVSSEEISSDMS 240
Query: 241 VSEKCGREEALVGSSPHLPALHYDEPAENLAEKSLPLPKSTSGSRRRSAVWKHFYLSPLD 300
VSEKCGREEALVGSSPHLPALHYDEPAENLAEKSLPLPKSTSGSRRRSAVWKHFYLSPLD
Sbjct: 241 VSEKCGREEALVGSSPHLPALHYDEPAENLAEKSLPLPKSTSGSRRRSAVWKHFYLSPLD 300
Query: 301 NSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAIVLQENGGTGIPPLYSTPPTLLP 360
NSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAIVLQENGGTGIPPLYSTPPTLLP
Sbjct: 301 NSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAIVLQENGGTGIPPLYSTPPTLLP 360
Query: 361 SLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLMEDVAAFSSSDDI 420
SLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLMEDVAAFSSSDDI
Sbjct: 361 SLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLMEDVAAFSSSDDI 420
Query: 421 GEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLAPMDSLKAECRYC 480
GEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLAPMDSLKAECRYC
Sbjct: 421 GEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLAPMDSLKAECRYC 480
Query: 481 GCAISRGKKGDVGTSCLMRHLYRRHPEVVGSQKGFLGASLANSPYATLASAESSSSKLTD 540
GCAISRGKKGDVGTSCLMRHLYRRHPEVVGSQKGFLGASLANSPYATLASAESSSSKLTD
Sbjct: 481 GCAISRGKKGDVGTSCLMRHLYRRHPEVVGSQKGFLGASLANSPYATLASAESSSSKLTD 540
Query: 541 LPTVVTKNNQVMFPVNSKKTSKLWNHFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCL 600
LPTVVTKNNQVMFPVNSKKTSKLWNHFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCL
Sbjct: 541 LPTVVTKNNQVMFPVNSKKTSKLWNHFSICSADSTKVVCLHCGRTISRGKKPTNLGTSCL 600
Query: 601 LRHLQRFHSNVLKTEVSETARPSSPDTRVPRGTELSGASSFDDTNEKFYDSHPVAKKITS 660
LRHLQRFHSNVLKTEVSETARPSSPDTRVPRGTELSGASSFDDTNEKFYDSHPVAKKITS
Sbjct: 601 LRHLQRFHSNVLKTEVSETARPSSPDTRVPRGTELSGASSFDDTNEKFYDSHPVAKKITS 660
Query: 661 LIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHL 720
LIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHL
Sbjct: 661 LIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTAIPGMYDNVKQIIMSHL 720
Query: 721 KEAESGVIHFTSGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYS 780
KEAESGVIHFTSGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYS
Sbjct: 721 KEAESGVIHFTSGIWMSNQTREYLTLTAHWVSFESPARPRCDDHHCSALLDVSQVDCDYS 780
Query: 781 GNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKTLNEGEHSSVQCFSHTVNLIVSEAI 840
GNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKTLNEGEHSSVQCFSHTVNLIVSEAI
Sbjct: 781 GNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKTLNEGEHSSVQCFSHTVNLIVSEAI 840
Query: 841 KSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLE 900
KSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLE
Sbjct: 841 KSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLE 900
Query: 901 RLIEQKRAINEMSVECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPM 960
RLIEQKRAINEMSVECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPM
Sbjct: 901 RLIEQKRAINEMSVECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPM 960
Query: 961 VHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEE 1020
VHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEE
Sbjct: 961 VHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEE 1020
Query: 1021 EAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL 1080
EAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL
Sbjct: 1021 EAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL 1080
Query: 1081 PEAMVLAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTE 1140
PEAMVLAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTE
Sbjct: 1081 PEAMVLAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTE 1140
Query: 1141 NGSLGQSRLMMEHFEKLIFLKVNLPLIYFQY 1171
NGSLGQSRLMMEHFEKLIFLKVNLPLIYFQY
Sbjct: 1141 NGSLGQSRLMMEHFEKLIFLKVNLPLIYFQY 1171
>gi|4759258 zinc finger, BED-type containing 1 [Homo sapiens]
Length = 694
Score = 143 bits (360), Expect = 1e-33
Identities = 166/679 (24%), Positives = 281/679 (41%), Gaps = 79/679 (11%)
Query: 532 ESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLHCGRT 585
+S S TDL V + + SK+W +F C K+ C C
Sbjct: 4 KSLESSQTDLKLVA----------HPRAKSKVWKYFGFDTNAEGCILQWKKIYCRICMAQ 53
Query: 586 ISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASSFDDT 644
I+ +NL H + F V TE A ++ P ++ G +
Sbjct: 54 IAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDALAVK 113
Query: 645 NEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYFSRTA 704
YDS +++T+ + +I L P S VD F LL+ P+Y LP+ Y S A
Sbjct: 114 AGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYISTKA 172
Query: 705 IPGMYDNVKQIIMSHLKEAESGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPARPRCDD 763
IP Y V+++I+ L AE+ ++ +W S NQ R Y+TL AH++ +P
Sbjct: 173 IPEKYGAVREVILKEL--AEATWCGISTDMWRSENQNRAYVTLAAHFLGLGAP------- 223
Query: 764 HHC----SALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--- 816
+C S L +V + + +I + L + W S + G T I K
Sbjct: 224 -NCLSMGSRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACSL 281
Query: 817 LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQRE 876
L+ H + C HT N + +A + ++ LLS RK+ E +S A L E Q++
Sbjct: 282 LDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQKQ 338
Query: 877 YALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSVC 934
+ L+ + S W ++ ML+RL EQ+ I + VE N ++ +W ++ +
Sbjct: 339 QNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLV 398
Query: 935 RALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGI----DTMLRSLKEAM 989
L+PF+ + +S ++ T+S V P++H ML T+ I L KE +
Sbjct: 399 ELLQPFKQVAEMLSASRYPTISMVKPLLH-------MLLNTTLNIKETDSKELSMAKEVI 451
Query: 990 VSRLSATLHDPRYV-----FATLLDPRYKASLFTEE-EAEQYKQDLIRELE-LMNSTS-- 1040
LS T + + AT LDPRYK F E +Q + ++ E + L++
Sbjct: 452 AKELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDG 511
Query: 1041 -------------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMV-- 1085
E+ +P S L + + + +E+ +V
Sbjct: 512 GYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEE 571
Query: 1086 -LAYLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSL 1144
+ ++VL + DPL +W+ + A +P L + ++ + V E+LF + S
Sbjct: 572 LSNFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSA 631
Query: 1145 GQSRLMMEHFEKLIFLKVN 1163
++RL H ++ +FL N
Sbjct: 632 KRNRLAPAHVDEQVFLYEN 650
>gi|124286830 zinc finger protein 618 [Homo sapiens]
Length = 861
Score = 45.1 bits (105), Expect = 4e-04
Identities = 85/409 (20%), Positives = 154/409 (37%), Gaps = 36/409 (8%)
Query: 763 DHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKTLNEGEH 822
+H S +L V D SG+ + ++ +V S V +T + + +
Sbjct: 481 NHIKSYVLGVKGADIRDSGDLVHHWVQNVLSEFVMSEIRTVYVT---DCRVSTSAFSKAG 537
Query: 823 SSVQCFSHTVNLIVSEAIKSQ----RMVQNLLSLARKICERVHRSPK-AKEKLAELQREY 877
++C + +N +V + + R + ++ L +CE + S AKE L+
Sbjct: 538 MCLRCSACALNSVVQSVLSKRTLQARSMHEVIELLN-VCEDLAGSTGLAKETFGSLEET- 595
Query: 878 ALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVECNFRELISCDQWEVMQSVCRAL 937
P W++ L + E+ I E LI ++ ++ L
Sbjct: 596 ---------SPPPCWNSVTDSLLLVHERYEQICEFYSRAKKMNLIQSLNKHLLSNLAAIL 646
Query: 938 KPFEAASREMSTQMS-TLSQVIPMVHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSAT 996
P + A E+S + TL V+P L + + + + EA+
Sbjct: 647 TPVKQAVIELSNESQPTLQLVLPTYVRLEKLFTAKANDAGTVSKLCHLFLEALKENFKV- 705
Query: 997 LHDPRYVFATLLDPRYKASLFTEEEAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSK 1056
P + A +LDP+ K Q+++ + + EL+N E A + +
Sbjct: 706 --HPAHKVAMILDPQQK---LRPVPPYQHEEIIGKVCELINEVKESWAEEADFEPAAKKP 760
Query: 1057 DSAAEENLWSLVAKVKKKDPREKLPEAMVLAYLEEEVLEHSCDPLTYWNLKKASWPGLSA 1116
SAA EN ++D R L + V YL+E + + + D YW+ L+
Sbjct: 761 RSAAVEN------PAAQEDDR--LGKNEVYDYLQEPLFQATPDLFQYWSCVTQKHTKLAK 812
Query: 1117 LAVRFLGCPPSIVPSEKLFNTPTENGSLGQSRLMM-EHFEKLIFLKVNL 1164
LA L P++ N + + + RL+ E KL+FLK N+
Sbjct: 813 LAFWLLAV-PAVGARSGCVNMCEQALLIKRRRLLSPEDMNKLMFLKSNM 860
>gi|56790947 zinc finger, BED domain containing 2 [Homo sapiens]
Length = 218
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 459 SEVWHHFSLAPM-----DSLKAECRYCGCAISRGKKGDVGTSCLMRHLYRRHPE 507
SE W +F LAP + A CR CG +SRG +VGT+ L +HL H E
Sbjct: 55 SEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE 108
Score = 39.3 bits (90), Expect = 0.022
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 274 SLPLPKSTSGSRRRSAVWKHFYLSPL-----DNSKAVCIHCMNEFSRGKNGKDLGTSCLI 328
++P P + R S W++F+L+P N A C C + SRG G ++GT+ L
Sbjct: 41 AMPTPMPHNKGTRFSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGP-GVNVGTTALW 99
Query: 329 RHMWRAHR 336
+H+ HR
Sbjct: 100 KHLKSMHR 107
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 541 LPTVVTKNNQVMFPVNSKKTSKLWNHFSICSA-----DSTKVVCLHCGRTISRGKKPTNL 595
+PT + N F S+ W +F + A + C CGR +SRG N+
Sbjct: 42 MPTPMPHNKGTRF-------SEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPG-VNV 93
Query: 596 GTSCLLRHLQRFHSNVLKT----EVSETARPSSPDTRVPRGTE 634
GT+ L +HL+ H L+ + + P ++P G E
Sbjct: 94 GTTALWKHLKSMHREELEKSGHGQAGQRQDPRPHGPQLPTGIE 136
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 39.7 bits (91), Expect = 0.017
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 288 SAVWKHFYLSP-----LDNSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAIVLQE 342
S W +F+L+P A C C + RG G GTS L RH+ AHR L+
Sbjct: 46 SEAWGYFHLAPGRPGHPSGHWATCRLCGEQVGRGP-GFHAGTSALWRHLRSAHRR-ELES 103
Query: 343 NGGTGIPPLYSTPPTLLPSLLPPEGE 368
+G PP PP P+ PEG+
Sbjct: 104 SGAGSSPPAAPCPPPPGPA-AAPEGD 128
Score = 38.5 bits (88), Expect = 0.038
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 459 SEVWHHFSLAP-----MDSLKAECRYCGCAISRGKKGDVGTSCLMRHLYRRH 505
SE W +F LAP A CR CG + RG GTS L RHL H
Sbjct: 46 SEAWGYFHLAPGRPGHPSGHWATCRLCGEQVGRGPGFHAGTSALWRHLRSAH 97
Score = 37.0 bits (84), Expect = 0.11
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 118 SPAWKHFFISPR-----DSTKAICMYCVKEFSRGKNEKDLSTSCLMRHVRRAHPTVLIQE 172
S AW +F ++P A C C ++ RG TS L RH+R AH L +
Sbjct: 46 SEAWGYFHLAPGRPGHPSGHWATCRLCGEQVGRGPGFH-AGTSALWRHLRSAHRREL-ES 103
Query: 173 NGSVSAVSSFPSPSLLLPPQPADA--GDLSTIL 203
+G+ S+ + P P PP PA A GD + +L
Sbjct: 104 SGAGSSPPAAPCPP---PPGPAAAPEGDWARLL 133
Score = 32.3 bits (72), Expect = 2.7
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 561 SKLWNHFSICSA-----DSTKVVCLHCGRTISRGKKPTNLGTSCLLRHLQRFHSNVLKTE 615
S+ W +F + C CG + RG + GTS L RHL+ H L++
Sbjct: 46 SEAWGYFHLAPGRPGHPSGHWATCRLCGEQVGRGPG-FHAGTSALWRHLRSAHRRELESS 104
Query: 616 VSETARPSSP 625
+ ++ P++P
Sbjct: 105 GAGSSPPAAP 114
>gi|19923961 hypothetical protein LOC113763 [Homo sapiens]
Length = 236
Score = 38.1 bits (87), Expect = 0.049
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 53/221 (23%)
Query: 945 REMSTQMSTLSQVIPMV---HILNRKVEMLFEE-TMGIDTMLRSLKEAMVSRL------S 994
RE S ++LSQV+P + HI +V F+E ++G L E + +L +
Sbjct: 4 REASAAQASLSQVLPQLRYLHIFLEQVHTHFQEQSVGERGAAIQLAEGLARQLCTDCQLN 63
Query: 995 ATLHDPRYVFATLLDPRYKASL-----FTEEEAEQYKQDLIRELE-------LMNSTS-- 1040
+ +V ATLLDP +K + + + + +KQ L+ +++ +NS S
Sbjct: 64 KLFYREEFVLATLLDPCFKGKIEAILPWGPTDIDHWKQVLVYKVKEIRVSEYSLNSPSPL 123
Query: 1041 ----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKL---------- 1080
VA S + S + + + + + ++K E +
Sbjct: 124 QSPRGLCVDPTRVAKSSGVEGRSQGEPLQSSSHSGAFLLAQREKGLLESMGLLASERSGG 183
Query: 1081 --------PEAMVLAYL-EEEVLEHSCDPLTYWNLKKASWP 1112
+V YL E E + DPL YW K+ +WP
Sbjct: 184 SLSTKSHWASIIVKKYLWENETVGAQDDPLAYWEKKREAWP 224
>gi|48762709 SAM domain, SH3 domain and nuclear localization signals,
1 [Homo sapiens]
Length = 373
Score = 37.4 bits (85), Expect = 0.084
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 936 ALKPFEAASREMSTQMSTLSQVIPMVHILNRKVEMLFEETMGIDTM--LRSLKEAMVSRL 993
A K +A R S + TL + + +H+ +L G +T+ L+ +KE+ + L
Sbjct: 228 APKKIKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLN---GYETLEDLKDIKESHLIEL 284
Query: 994 SATLHDPRYVFATLLDPRYKASLFTEEEAEQYKQDLIRELELMNSTSEDVAASHRCDAGS 1053
+ D R + + + + E+E E L ++ L S +D C S
Sbjct: 285 NIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDCPRDSGCYISS 344
Query: 1054 PSKDSAAE----ENLWSLVAKVKKKDPRE 1078
+ D+ E ENL +V K+ +P +
Sbjct: 345 GNSDNGKEDLESENLSDMVHKIIITEPSD 373
>gi|139948432 adlican [Homo sapiens]
Length = 2828
Score = 36.6 bits (83), Expect = 0.14
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 279 KSTSGSRRRSAVWKHFYLSPLDNSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAI 338
K RR+ +WKH P N + + ++ + W A
Sbjct: 735 KKAKKGRRKLKLWKHSEKEPETN-----VAEGRRVFESRRRINMANKQINPERWADILAK 789
Query: 339 VLQEN--GGTGIPPLYST--PPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLT 394
V +N GT +PPL T PP+L + PP +S S+SPV+ V + +S+ L
Sbjct: 790 VRGKNLPKGTEVPPLIKTTSPPSLSLEVTPPFPAISPPSASPVQTVTSAEESSADVPLLG 849
Query: 395 ED 396
E+
Sbjct: 850 EE 851
>gi|55749621 pleckstrin homology domain containing, family G, member
3 [Homo sapiens]
Length = 1163
Score = 35.8 bits (81), Expect = 0.25
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 364 PPEGELSSVSSSPVKP-VRESPSASSSPDRLTEDLQSHLN------PGDGLMEDVAAFSS 416
P G V S+ P E+PS + SP+ L L +H PGD M D A S
Sbjct: 455 PEAGSEQEVFSAVEGPSAEETPSDTESPEVLETQLDAHQGLLGMDPPGD--MVDFVAAES 512
Query: 417 SDDIGEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLAPMDS 472
++D+ S+ E+ P ++ Q + +R S S+A DS
Sbjct: 513 TEDLKALSSEEEEEMGGAAQEPESLLPPSVLDQASVIAERFVSSFSRRSSVAQEDS 568
>gi|224591404 cancer/testis antigen family 147, member B1 [Homo
sapiens]
Length = 299
Score = 35.4 bits (80), Expect = 0.32
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 169 LIQENGSVSAVSSFPSPSLLLPPQPADAGDLSTILSPIKLVQKVASKIPSPDRITEESVS 228
LIQE SV +S P P++ PAD +++ + ++ A + P P+ EE ++
Sbjct: 189 LIQEAASVQEAASVPEPAV-----PADLAEMAR-----EPAEEAADEKP-PEEAAEEKLT 237
Query: 229 VVSSEEISSDMSVSEKCGREEALVGSSPHLPALHYDEPAENLA 271
++EE +++ SE+ E + S P +DE A++ A
Sbjct: 238 EEATEEPAAEEPTSEEAVAPEEVTKSQPE----KWDEEAQDAA 276
>gi|4506453 retinol-binding protein 3 precursor [Homo sapiens]
Length = 1247
Score = 35.0 bits (79), Expect = 0.42
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 493 GTSCLMRHLYRRHPEVVGSQKGFLGASLANSPYATLASAESSSSKLT-DLPTVVTKNNQV 551
GT L+ Y R PEVVG L A LA Y T ES +S+LT DL V + +
Sbjct: 642 GTGHLLEAHYAR-PEVVGQTSALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLL 700
Query: 552 MF 553
+F
Sbjct: 701 VF 702
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 35.0 bits (79), Expect = 0.42
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 350 PLYSTPPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLME 409
P+ S + PS +PP L S ++SP P S S+SSS S +P +
Sbjct: 820 PILSPTVSPSPSPIPPVEPLMS-AASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 878
Query: 410 DVAAFSSSDDIGEAS----ASSPEKQQADGLSPR 439
+++ SS D EAS + E+ + +GL PR
Sbjct: 879 AISSVVSSGDNLEASLPMISFKQEELENEGLKPR 912
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 349 PPLYSTPPTLLPSLL----PPEGELSSVSSSPVKPVRESPSASSSPDRL--TEDLQSHLN 402
PPL T P PS P LS+ ++ P+ SP+ S SP + E L S +
Sbjct: 786 PPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPIL-SPTVSPSPSPIPPVEPLMSAAS 844
Query: 403 PGDGLMEDVAAFSSSDDIGEASASS 427
PG + ++ SSS +S+SS
Sbjct: 845 PGPPTLSSSSSSSSSSSSFSSSSSS 869
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 35.0 bits (79), Expect = 0.42
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 350 PLYSTPPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLME 409
P+ S + PS +PP L S ++SP P S S+SSS S +P +
Sbjct: 1021 PILSPTVSPSPSPIPPVEPLMS-AASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 1079
Query: 410 DVAAFSSSDDIGEAS----ASSPEKQQADGLSPR 439
+++ SS D EAS + E+ + +GL PR
Sbjct: 1080 AISSVVSSGDNLEASLPMISFKQEELENEGLKPR 1113
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 349 PPLYSTPPTLLPSLL----PPEGELSSVSSSPVKPVRESPSASSSPDRL--TEDLQSHLN 402
PPL T P PS P LS+ ++ P+ SP+ S SP + E L S +
Sbjct: 987 PPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPIL-SPTVSPSPSPIPPVEPLMSAAS 1045
Query: 403 PGDGLMEDVAAFSSSDDIGEASASS 427
PG + ++ SSS +S+SS
Sbjct: 1046 PGPPTLSSSSSSSSSSSSFSSSSSS 1070
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 35.0 bits (79), Expect = 0.42
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 350 PLYSTPPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGLME 409
P+ S + PS +PP L S ++SP P S S+SSS S +P +
Sbjct: 1021 PILSPTVSPSPSPIPPVEPLMS-AASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLS 1079
Query: 410 DVAAFSSSDDIGEAS----ASSPEKQQADGLSPR 439
+++ SS D EAS + E+ + +GL PR
Sbjct: 1080 AISSVVSSGDNLEASLPMISFKQEELENEGLKPR 1113
Score = 31.6 bits (70), Expect = 4.6
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 349 PPLYSTPPTLLPSLL----PPEGELSSVSSSPVKPVRESPSASSSPDRL--TEDLQSHLN 402
PPL T P PS P LS+ ++ P+ SP+ S SP + E L S +
Sbjct: 987 PPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPIL-SPTVSPSPSPIPPVEPLMSAAS 1045
Query: 403 PGDGLMEDVAAFSSSDDIGEASASS 427
PG + ++ SSS +S+SS
Sbjct: 1046 PGPPTLSSSSSSSSSSSSFSSSSSS 1070
>gi|7657455 pescadillo homolog 1, containing BRCT domain [Homo
sapiens]
Length = 588
Score = 34.3 bits (77), Expect = 0.71
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 355 PPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDG------LM 408
PP L P + EG+ + ++ + + E+ + N GDG
Sbjct: 420 PPHLSPFVTEKEGDYVPPEKLKLLALQRGEDPGNLNESEEEEEEDDNNEGDGDEEGENEE 479
Query: 409 EDVAAFSSSDDIGEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKSEVWHHFSLA 468
E+ A + S+ EA ++ E+Q+ +G PR+ + +++ + +SE LA
Sbjct: 480 EEEDAEAGSEKEEEARLAALEEQRMEGKKPRVMAGTLKLEDKQRLAQEEESEAKR---LA 536
Query: 469 PMDSLKAECRYCGCAISRGKKGDVGTSCLMRHLYRRHPEVVGSQK 513
M K E +Y I GK+ + + + + H E V S+K
Sbjct: 537 IMMMKKRE-KYLYQKIMFGKRRKIREANKLAEKRKAHDEAVRSEK 580
>gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens]
Length = 452
Score = 34.3 bits (77), Expect = 0.71
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 340 LQENGGTGIPPLYSTPPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQS 399
L E G+PPL S PP LP + P + S P+ P ES SA+SS + L+ +
Sbjct: 333 LPELVNPGLPPLPSMPPRNLPGIAPLPLPSEFLPSFPLVP--ESSSAASSGELLSSLPPT 390
Query: 400 HLNPGDGLMEDV---AAFSSSDDIGEASASSP 428
P D AA S + D+ +A +P
Sbjct: 391 SNAPSDPATTTAKADAASSLTVDVTPPTAKAP 422
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 34.3 bits (77), Expect = 0.71
Identities = 52/278 (18%), Positives = 111/278 (39%), Gaps = 31/278 (11%)
Query: 837 SEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSF 896
S A++ Q++ + +++ + R E++ ++ ++ Q ++DV
Sbjct: 1695 SSALEQQKIQSQQENTIKQLEQLRQRFELEIERMKQMHQKDREDQEEELEDVRQSCQKRL 1754
Query: 897 HMLERLIEQKRAINEMSV--ECNFRELIS--CDQ-----WEVMQSVCRALKPFEAASREM 947
H LE +EQ+ +M + + + LI CDQ ++V + + R L+ A ++
Sbjct: 1755 HQLEMQLEQEYEEKQMVLHEKQDLEGLIGTLCDQIGHRDFDVEKRLRRDLRRTHALLSDV 1814
Query: 948 STQMSTL--------SQVIPMVHILNRKVEMLFEETMGIDTMLRSLKEAMVSRLSATLHD 999
+ T+ + + VH + E EE + +L + E+M S L +
Sbjct: 1815 QLLLGTMEDGKTSVSKEELEKVHSQLEQSEAKCEEALKTQKVLTADLESMHSELENMTRN 1874
Query: 1000 PRYVFATLLDPRYKASLFTEEEAEQYKQDLIRELELMNSTSEDVAASHRCDAGSPSKDSA 1059
V L +++ K DL++ ++ ++ H+ + D
Sbjct: 1875 KSLVDEQLYRLQFE------------KADLLKRIDEDQDDLNELMQKHKDLIAQSAADIG 1922
Query: 1060 AEENLWSLVAKVKKKDPREKLPEAMVLAYLEEEVLEHS 1097
+ L + + KK+ + KL E + +A + E LE S
Sbjct: 1923 QIQELQLQLEEAKKE--KHKLQEQLQVAQMRIEYLEQS 1958
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 33.9 bits (76), Expect = 0.93
Identities = 50/237 (21%), Positives = 97/237 (40%), Gaps = 17/237 (7%)
Query: 801 LQVGITVTDNASIGKTLNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERV 860
LQV + ++ ++N ++Q +V E K R + ++ ER+
Sbjct: 361 LQVLLLQAHGGTLPGSINAEPSENLQSLMEKNQSLVEENEKLSRCLSKAAGQTAQMLERI 420
Query: 861 HRSPKAKEKL-AELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVECNFR 919
+ + EKL A+L+ L Q V K L +E + + + CN +
Sbjct: 421 ILTEQVNEKLNAKLE--------ELRQHVACK--LDLQKLVETLEDQELKENVEIICNLQ 470
Query: 920 ELISCDQWEVMQSVCRALKPF--EAASREMSTQMSTLSQVIPMVHILNRKVEMLFEETMG 977
+LI+ E + A+ E A E S + S S H L++ + +E +
Sbjct: 471 QLITQLSDETVACTAAAIDTAVEEEAQVETSPETSRSSDAFTTQHALHQ--AQMSKEVVE 528
Query: 978 IDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEEEAEQYKQDLIRELE 1034
++ L +LKEA+V +++ + + + D K ++ K++L+REL+
Sbjct: 529 LNNAL-ALKEALVRKMTQNDNQLQPIQFQYQD-NIKNLELEVINLQKEKEELVRELQ 583
>gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens]
Length = 511
Score = 33.9 bits (76), Expect = 0.93
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 349 PPLYST-PPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHLNPGDGL 407
PP+ ST + +P+ PP S S+ P+ +S S ++ T D+ + +P DGL
Sbjct: 70 PPIISTHSSSTIPTPAPPIISTHSSSTIPIPTAADSESTTNVNSLATSDIITASSPNDGL 129
Query: 408 MEDVAAFSSSDDIGEASASSPEKQQA 433
+ V + + S++ E S ++ + Q +
Sbjct: 130 ITMVPSETQSNN--EMSPTTEDNQSS 153
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 33.9 bits (76), Expect = 0.93
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 962 HILNRKVEMLFEETMGIDTMLRSLKEAM------VSRLSATL---HDPRYVFATLLDPRY 1012
H++N + ++L++E + TM+++ K + V +L + L H + ++P
Sbjct: 1849 HLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTE 1908
Query: 1013 KASLFTEEEAEQYKQD---LIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSL 1067
+ L + E +Q++++ R++ MNS +++ H + G K +E L +
Sbjct: 1909 QEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1966
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 33.9 bits (76), Expect = 0.93
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 962 HILNRKVEMLFEETMGIDTMLRSLKEAM------VSRLSATL---HDPRYVFATLLDPRY 1012
H++N + ++L++E + TM+++ K + V +L + L H + ++P
Sbjct: 1843 HLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTE 1902
Query: 1013 KASLFTEEEAEQYKQD---LIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSL 1067
+ L + E +Q++++ R++ MNS +++ H + G K +E L +
Sbjct: 1903 QEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1960
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 33.9 bits (76), Expect = 0.93
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 962 HILNRKVEMLFEETMGIDTMLRSLKEAM------VSRLSATL---HDPRYVFATLLDPRY 1012
H++N + ++L++E + TM+++ K + V +L + L H + ++P
Sbjct: 1843 HLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTE 1902
Query: 1013 KASLFTEEEAEQYKQD---LIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSL 1067
+ L + E +Q++++ R++ MNS +++ H + G K +E L +
Sbjct: 1903 QEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1960
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 33.9 bits (76), Expect = 0.93
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 962 HILNRKVEMLFEETMGIDTMLRSLKEAM------VSRLSATL---HDPRYVFATLLDPRY 1012
H++N + ++L++E + TM+++ K + V +L + L H + ++P
Sbjct: 1843 HLMNEEQQLLWQENERLQTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTE 1902
Query: 1013 KASLFTEEEAEQYKQD---LIRELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSL 1067
+ L + E +Q++++ R++ MNS +++ H + G K +E L +
Sbjct: 1903 QEKLSLKRECDQFQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEM 1960
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 33.5 bits (75), Expect = 1.2
Identities = 64/319 (20%), Positives = 124/319 (38%), Gaps = 31/319 (9%)
Query: 792 WEAWVTSTGLQVGITVTDNASIGKTLN-EGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLL 850
WE ++S + + ++ + ++ EGE Q + + E K R+ +
Sbjct: 1525 WENMLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQVTEEQRH--IQEEHKWARIHRKRA 1582
Query: 851 SLARKICERVHRSPKAKEKLAELQREYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAIN 910
+K + + + +EKLA+ +R+ A + L Q M + E K A
Sbjct: 1583 RAEKKRAQEERKLAQEEEKLAQEERQLAQEERKLAQAYVKITQDDREMAQA--EGKFAQK 1640
Query: 911 EMSVECNFRELISCDQWEVMQSVCRALKPFEAASREMSTQMSTLSQVIPMVHILNRKVEM 970
E ++ E +S + ++ Q + K +E +RE ++ + +IL +KVE
Sbjct: 1641 EETL-AQRGEKLSQEAEKLAQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNILAQKVEE 1699
Query: 971 LFEETMGIDTMLRSLKEAMVSRLSATLHDPRYVFATLLDPRYKASLFTEEEAEQYKQDLI 1030
L + +D + L + + L+ + + EEE Q + L+
Sbjct: 1700 LPQREQNLDWQEKELAQELEE----------------LEWDMEELSWKEEELNQEEGKLV 1743
Query: 1031 RELELMNSTSEDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLAYLE 1090
E + + E+ A + + + S + A+E + K K +EK+PE E
Sbjct: 1744 EEKKKL--AEEEEALAWQREKLSEEETKLAQEEELLIQEKEKLAQHKEKMPE-------E 1794
Query: 1091 EEVLEHSCDPLTYWNLKKA 1109
EE L + L +K A
Sbjct: 1795 EERLGRKREQLIEKKMKLA 1813
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 33.1 bits (74), Expect = 1.6
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 32 IPPDSLERMDFKSEQEDMKQT---DSGGERAGLGGTGCSCKPPGKYLSAESEDDYGALFS 88
+P ++ DF+SE+ED+K T S G+ A + S KP E E +
Sbjct: 1282 VPQSKWDKDDFESEEEDVKSTQPISSVGKPASV-IKNVSTKPSNIVKYPEKESEPSEKIQ 1340
Query: 89 QYSSTLYDVAMEAVTQSLLSSRNMSSRKK 117
+++ DV+ E + + SS+N +S +K
Sbjct: 1341 KFTK---DVSHEIIQHEVKSSKNSASSEK 1366
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 33.1 bits (74), Expect = 1.6
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 32 IPPDSLERMDFKSEQEDMKQT---DSGGERAGLGGTGCSCKPPGKYLSAESEDDYGALFS 88
+P ++ DF+SE+ED+K T S G+ A + S KP E E +
Sbjct: 1316 VPQSKWDKDDFESEEEDVKSTQPISSVGKPASV-IKNVSTKPSNIVKYPEKESEPSEKIQ 1374
Query: 89 QYSSTLYDVAMEAVTQSLLSSRNMSSRKK 117
+++ DV+ E + + SS+N +S +K
Sbjct: 1375 KFTK---DVSHEIIQHEVKSSKNSASSEK 1400
>gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo
sapiens]
Length = 817
Score = 32.7 bits (73), Expect = 2.1
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 342 ENGGTGIPPLYSTPPTLLPSLLPPEGELSSVSSSPVKPVRESPSASSSPDRLTEDLQSHL 401
ENG T + S P + PE E ++V+ P + V + +P+ + E +
Sbjct: 330 ENGST-VATAASPAPEEPKAQAAPEKEAAAVAP-PERGVGNGRAPDVAPEEVDESKKEDF 387
Query: 402 NPGDGLMEDVAAFSS--SDDIGEASASSPEKQQADGLSPRLFESGAIFQQNKKVMKRLKS 459
+ D + DV+A+S D G A E + DG P ESG + +
Sbjct: 388 SEAD--LVDVSAYSGLGEDSAGSALEEDDEDDEEDGEPPYEPESGCVEIPGLSEEEDPAP 445
Query: 460 EVWHHFSLAPM 470
HFS AP+
Sbjct: 446 SRKIHFSTAPI 456
>gi|153218631 breast carcinoma amplified sequence 3 isoform 1 [Homo
sapiens]
Length = 928
Score = 32.7 bits (73), Expect = 2.1
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 816 TLNEGE-HSSVQ--CFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAE 872
TL+ GE + VQ CFSH +V ++ V + + C R H SP+ +++
Sbjct: 398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSR 457
Query: 873 LQREYALPQHHLIQDVPSK 891
Q+ L + + Q++ SK
Sbjct: 458 FQKSAGLEE--IEQELTSK 474
>gi|153218595 breast carcinoma amplified sequence 3 isoform 2 [Homo
sapiens]
Length = 913
Score = 32.7 bits (73), Expect = 2.1
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 816 TLNEGE-HSSVQ--CFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAE 872
TL+ GE + VQ CFSH +V ++ V + + C R H SP+ +++
Sbjct: 398 TLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSR 457
Query: 873 LQREYALPQHHLIQDVPSK 891
Q+ L + + Q++ SK
Sbjct: 458 FQKSAGLEE--IEQELTSK 474
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.7 bits (73), Expect = 2.1
Identities = 49/171 (28%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 236 SSDMS-VSEKCGREEALVGSSPHL----PALHYDEPAENLAEKSLPLPKSTSGSRRRSAV 290
SSD++ VS L S HL P P+ + LP ++ GS S
Sbjct: 438 SSDLTRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQMHLPDGRAQPGSPESSGQ 497
Query: 291 WKHFYLSPLD-NSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHRAI-----VLQENG 344
K + D +K C C+ EF L HM R+H + + QE G
Sbjct: 498 PKGAFGEQFDAKNKLTCSICLKEFKN--------LPALNGHM-RSHGGMRASPNLKQEEG 548
Query: 345 GTGIPP-----LYSTPPTLLPSLLPPEGELSSVSSSPVK-PVRESPSASSS 389
+PP L PP P LPPE E + PV PV+ P SS
Sbjct: 549 EKVLPPQPQPPLPPPPPPPPPPQLPPEAESLTPMVMPVSVPVKLLPPKPSS 599
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,134,676
Number of Sequences: 37866
Number of extensions: 2270537
Number of successful extensions: 9248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 9089
Number of HSP's gapped (non-prelim): 214
length of query: 1171
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1058
effective length of database: 13,968,660
effective search space: 14778842280
effective search space used: 14778842280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.