Guide to the Human Genome
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Name: ZBED2 Sequence: fasta or formatted (218aa) NCBI GI: 56790947
Description:

zinc finger, BED domain containing 2

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         19           2
 C cysteine            1.4          3           1
 D aspartate           1.4          3           1
 E glutamate          15.6         34           4
 F phenylalanine       2.3          5           1
 G glycine             8.3         18           1
 H histidine           4.6         10           2
 I isoleucine          1.4          3           1
 K lysine              6.0         13           1
 L leucine             6.9         15           2
 M methionine          4.6         10           2
 N asparagine          1.8          4           1
 P proline             6.0         13           1
 Q glutamine           4.1          9           1
 R arginine           10.1         22           2
 S serine              3.2          7           1
 T threonine           4.1          9           2
 V valine              6.0         13           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, BED domain containing 2 
ZBED3                 0.342   zinc finger, BED-type containing 3 
ZBED4                 0.044   zinc finger, BED-type containing 4 
SFRS17A               0.030   DNA segment on chromosome X and Y (unique) 155 expre...
LOC100133758          0.026   PREDICTED: hypothetical protein, partial 
DBNL                  0.026   drebrin-like isoform b 
CALD1                 0.023   caldesmon 1 isoform 1 
LOC400352             0.023   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.023   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.023   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.023   inner centromere protein antigens 135/155kDa isofor...
DBNL                  0.023   drebrin-like isoform a 
LOC727832             0.021   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.021   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.021   PREDICTED: Putative golgin subfamily A member 6-lik...
CCDC70                0.021   coiled-coil domain containing 70 precursor 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.019   TRAF2 and NCK interacting kinase isoform 1 
DBNL                  0.019   drebrin-like isoform c 
MYH9                  0.019   myosin, heavy polypeptide 9, non-muscle 
UIMC1                 0.019   ubiquitin interaction motif containing 1 
BAZ1A                 0.019   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.019   bromodomain adjacent to zinc finger domain, 1A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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