Guide to the Human Genome
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Name: RBP3 Sequence: fasta or formatted (1247aa) NCBI GI: 4506453
Description:

retinol-binding protein 3 precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        110           3
 C cysteine            0.6          8           1
 D aspartate           4.7         59           2
 E glutamate           6.8         85           3
 F phenylalanine       2.6         33           3
 G glycine             7.7         96           3
 H histidine           3.0         37           1
 I isoleucine          4.1         51           2
 K lysine              2.4         30           2
 L leucine            12.8        159           3
 M methionine          2.4         30           2
 N asparagine          1.8         22           1
 P proline             6.6         82           5
 Q glutamine           4.4         55           2
 R arginine            4.4         55           2
 S serine              7.4         92           2
 T threonine           6.5         81           3
 V valine              8.9        111           3
 W tryptophan          1.2         15           1
 Y tyrosine            2.9         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol-binding protein 3 precursor 
MIDN                  0.005   midnolin 
ZBED4                 0.004   zinc finger, BED-type containing 4 
KIF24                 0.004   kinesin family member 24 
BMP3                  0.004   bone morphogenetic protein 3 preproprotein 
TTN                   0.003   titin isoform N2-A 
TTN                   0.003   titin isoform novex-2 
TTN                   0.003   titin isoform novex-1 
TTN                   0.003   titin isoform N2-B 
FIGN                  0.003   fidgetin 
NEK5                  0.003   NIMA-related kinase 5 
C9orf144B             0.003   hypothetical protein LOC259308 
REC8                  0.003   REC8 homolog 
REC8                  0.003   REC8 homolog 
GLYCTK                0.002   glycerate kinase isoform 1 
CNTROB                0.002   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.002   centrobin, centrosomal BRCA2 interacting protein iso...
TRIM25                0.002   tripartite motif-containing 25 
ISLR2                 0.002   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.002   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.002   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.002   immunoglobulin superfamily containing leucine-rich ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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