Guide to the Human Genome
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Name: MUC13 Sequence: fasta or formatted (511aa) NCBI GI: 51593090
Description:

mucin 13, epithelial transmembrane

Referenced in:

Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         38           3
 C cysteine            3.9         20           1
 D aspartate           5.7         29           2
 E glutamate           4.7         24           3
 F phenylalanine       2.9         15           1
 G glycine             4.7         24           2
 H histidine           1.8          9           1
 I isoleucine          6.1         31           2
 K lysine              4.7         24           2
 L leucine             7.0         36           2
 M methionine          1.6          8           1
 N asparagine          6.5         33           2
 P proline             6.7         34           2
 Q glutamine           3.3         17           1
 R arginine            2.2         11           1
 S serine             11.9         61           4
 T threonine          11.9         61           3
 V valine              4.7         24           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3         12           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 13, epithelial transmembrane 
HEG1                  0.053   HEG homolog 1 
LOC100294420          0.041   PREDICTED: similar to mucin 2 
MUC2                  0.039   mucin 2 precursor 
MUC7                  0.033   mucin 7, secreted precursor 
MUC7                  0.033   mucin 7, secreted precursor 
MUC7                  0.033   mucin 7, secreted precursor 
MUC17                 0.033   mucin 17 
MUC3A                 0.032   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.032   PREDICTED: mucin 3A, intestinal 
LOC100133790          0.032   PREDICTED: intestinal mucin-like, partial 
MUC21                 0.032   mucin 21 
LOC100131514          0.031   PREDICTED: similar to hCG1747327, partial 
LOC100131251          0.031   PREDICTED: hypothetical protein 
LOC100131251          0.031   PREDICTED: hypothetical protein 
LOC730474             0.030   PREDICTED: hypothetical protein, partial 
LOC100294236          0.029   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC4                  0.029   mucin 4 isoform a 
LOC100132635          0.028   PREDICTED: similar to mucin 5, partial 
MUC3B                 0.028   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100133408          0.027   PREDICTED: similar to mucin 
MUC5B                 0.027   mucin 5, subtype B, tracheobronchial 
MUC6                  0.027   mucin 6, gastric 
LOC729792             0.026   PREDICTED: hypothetical protein 
LOC729792             0.026   PREDICTED: hypothetical protein 
LOC729792             0.026   PREDICTED: hypothetical protein 
LOC100294501          0.026   PREDICTED: hypothetical protein 
LOC100294249          0.026   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.026   PREDICTED: hypothetical protein 
LOC100294204          0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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