Guide to the Human Genome
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Name: SPRYD5 Sequence: fasta or formatted (452aa) NCBI GI: 209862805
Description:

SPRY domain containing 5

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         20           2
 C cysteine            5.8         26           2
 D aspartate           5.3         24           2
 E glutamate           8.4         38           3
 F phenylalanine       4.9         22           1
 G glycine             4.6         21           1
 H histidine           3.3         15           2
 I isoleucine          4.2         19           1
 K lysine              4.9         22           2
 L leucine            10.8         49           3
 M methionine          2.9         13           1
 N asparagine          4.4         20           2
 P proline             4.2         19           2
 Q glutamine           4.9         22           2
 R arginine            6.2         28           2
 S serine              7.1         32           2
 T threonine           4.6         21           2
 V valine              4.6         21           2
 W tryptophan          2.0          9           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPRY domain containing 5 
LOC120824             0.856   PREDICTED: similar to hCG1802386 
LOC120824             0.854   PREDICTED: similar to hCG1802386 
LOC120824             0.854   PREDICTED: similar to hCG1802386 
LOC283116             0.759   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.759   PREDICTED: similar to ring finger protein 18 
LOC283116             0.759   PREDICTED: similar to ring finger protein 18 
LOC653111             0.745   PREDICTED: similar to ring finger protein 18 
TRIM49                0.742   ring finger protein 18 
LOC729384             0.729   hypothetical protein LOC729384 
LOC100134006          0.729   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.729   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.729   PREDICTED: similar to ring finger protein 18 
LOC399939             0.729   PREDICTED: similar to ring finger protein 18 
LOC283116             0.586   PREDICTED: similar to ring finger protein 18 isofor...
TRIM43                0.461   tripartite motif-containing 43 
LOC653192             0.454   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM53                0.447   tripartite motif-containing 53 
LOC642425             0.447   tripartite motif-containing 53-like 
LOC642425             0.447   PREDICTED: tripartite motif-containing 53-like [Hom...
LOC340970             0.439   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.439   PREDICTED: similar to tripartite motif-containing 5...
LOC340970             0.437   PREDICTED: similar to tripartite motif-containing 5...
LOC642446             0.420   PREDICTED: tripartite motif-containing protein 64B-...
TRIM64                0.419   tripartite motif-containing 64 
LOC646754             0.389   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.389   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.389   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.373   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.373   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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