TRIM13 30420

Name: TRIM13	Sequence: fasta or formatted (407aa)		NCBI GI: 47132524
Description: ret finger protein 2 isoform 1		Referenced in: Tripartite Motif Family
Other entries for this name: alt mRNA [407aa] ret finger protein 2 isoform 1 alt mRNA [407aa] ret finger protein 2 isoform 1 alt prot [410aa] ret finger protein 2 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.9 16 1 C cysteine 3.7 15 2 D aspartate 5.7 23 2 E glutamate 7.4 30 2 F phenylalanine 7.6 31 2 G glycine 3.4 14 1 H histidine 1.2 5 1 I isoleucine 5.9 24 1 K lysine 8.6 35 2 L leucine 12.3 50 3 M methionine 2.2 9 1 N asparagine 4.2 17 2 P proline 4.7 19 2 Q glutamine 4.4 18 2 R arginine 3.2 13 2 S serine 6.9 28 2 T threonine 5.9 24 1 V valine 5.2 21 2 W tryptophan 1.7 7 1 Y tyrosine 2.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ret finger protein 2 isoform 1 TRIM13 1.000 ret finger protein 2 isoform 2 TRIM13 1.000 ret finger protein 2 isoform 1 TRIM13 1.000 ret finger protein 2 isoform 1 TRIM59 0.228 tripartite motif-containing 59 TRIM4 0.093 tripartite motif protein TRIM4 isoform alpha TRIM63 0.092 muscle specific ring finger protein 1 TRIM4 0.089 tripartite motif protein TRIM4 isoform beta TRIM50 0.089 tripartite motif protein 50A TRIM54 0.085 ring finger protein 30 isoform 2 TRIM68 0.084 ring finger protein 137 TRIM55 0.084 tripartite motif-containing 55 isoform 3 TRIM55 0.084 tripartite motif-containing 55 isoform 1 TRIM55 0.084 tripartite motif-containing 55 isoform 2 TRIM62 0.083 tripartite motif-containing 62 TRIM72 0.078 tripartite motif-containing 72 TRIM73 0.078 tripartite motif-containing 73 TRIM74 0.077 tripartite motif-containing 74 TRIM39 0.075 tripartite motif-containing 39 isoform 2 TRIM39 0.075 tripartite motif-containing 39 isoform 1 TRIM11 0.075 tripartite motif-containing 11 TRIM60 0.075 ring finger protein 129 TRIM54 0.075 ring finger protein 30 isoform 1 TRIM22 0.073 tripartite motif-containing 22 TRIM34 0.072 tripartite motif protein 34 isoform 1 TRIM34 0.072 tripartite motif protein 34 isoform 1 TRIM6-TRIM34 0.072 tripartite motif-containing 6 and tripartite motif-c... TRIM31 0.071 tripartite motif protein 31 TRIM7 0.071 tripartite motif-containing 7 isoform 1 TRIM10 0.071 tripartite motif-containing 10 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.