Guide to the Human Genome
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Name: MID2 Sequence: fasta or formatted (735aa) NCBI GI: 223890257
Description:

midline 2 isoform 1

Referenced in:

Fibronectin Family
Serine / Threonine Protein Phosphatases
Tripartite Motif Family

Other entries for this name:
alt prot [705aa] midline 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         43           2
 C cysteine            4.5         33           1
 D aspartate           4.5         33           2
 E glutamate           6.8         50           2
 F phenylalanine       3.7         27           1
 G glycine             3.9         29           2
 H histidine           3.1         23           1
 I isoleucine          6.0         44           2
 K lysine              6.0         44           2
 L leucine             9.1         67           3
 M methionine          2.6         19           1
 N asparagine          5.7         42           2
 P proline             5.0         37           2
 Q glutamine           4.2         31           2
 R arginine            5.3         39           2
 S serine              9.0         66           2
 T threonine           5.3         39           2
 V valine              5.6         41           2
 W tryptophan          1.4         10           1
 Y tyrosine            2.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   midline 2 isoform 1 
MID2                  0.944   midline 2 isoform 2 
MID1                  0.705   midline 1 
MID1                  0.705   midline 1 
MID1                  0.705   midline 1 
TRIM36                0.129   tripartite motif-containing 36 isoform 1 
TRIM46                0.115   tripartite motif-containing 46 
FSD1L                 0.112   fibronectin type III and SPRY domain containing 1-li...
FSD1                  0.112   fibronectin type III and SPRY domain containing 1 [H...
FSD1L                 0.112   fibronectin type III and SPRY domain containing 1-l...
TRIM67                0.110   tripartite motif-containing 67 
TRIM9                 0.108   tripartite motif protein 9 isoform 1 
FSD2                  0.102   fibronectin type III and SPRY domain containing 2 [H...
TRIM9                 0.090   tripartite motif protein 9 isoform 2 
TRIM25                0.077   tripartite motif-containing 25 
TRIM54                0.067   ring finger protein 30 isoform 1 
TRIM55                0.067   tripartite motif-containing 55 isoform 3 
TRIM55                0.067   tripartite motif-containing 55 isoform 1 
TRIM55                0.067   tripartite motif-containing 55 isoform 2 
TRIM63                0.059   muscle specific ring finger protein 1 
TRIM54                0.056   ring finger protein 30 isoform 2 
TRIM8                 0.054   tripartite motif-containing 8 
TRIM42                0.052   tripartite motif-containing 42 
TRIM55                0.043   tripartite motif-containing 55 isoform 4 
TRIM23                0.043   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.043   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.043   ADP-ribosylation factor domain protein 1 isoform alph...
TRIM33                0.038   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.038   tripartite motif-containing 33 protein isoform alpha...
CMYA5                 0.038   cardiomyopathy associated 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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