Guide to the Human Genome
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Name: TRIM2 Sequence: fasta or formatted (744aa) NCBI GI: 194248081
Description:

tripartite motif-containing 2 isoform 2

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [771aa] tripartite motif-containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         41           2
 C cysteine            2.4         18           2
 D aspartate           5.4         40           2
 E glutamate           5.6         42           2
 F phenylalanine       4.4         33           2
 G glycine             8.2         61           1
 H histidine           2.8         21           1
 I isoleucine          6.2         46           3
 K lysine              6.5         48           2
 L leucine             8.1         60           2
 M methionine          1.3         10           1
 N asparagine          6.3         47           2
 P proline             4.2         31           1
 Q glutamine           5.4         40           1
 R arginine            3.9         29           2
 S serine              7.8         58           2
 T threonine           6.3         47           2
 V valine              7.5         56           3
 W tryptophan          0.3          2           1
 Y tyrosine            1.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 2 isoform 2 
TRIM2                 1.000   tripartite motif-containing 2 isoform 1 
TRIM3                 0.684   tripartite motif-containing 3 
TRIM3                 0.684   tripartite motif-containing 3 
TRIM71                0.193   tripartite motif-containing 71 
TRIM45                0.086   tripartite motif-containing 45 isoform 1 
TRIM45                0.073   tripartite motif-containing 45 isoform 2 
TRIM32                0.062   tripartite motif-containing 32 
TRIM32                0.062   tripartite motif-containing 32 
TRIM54                0.048   ring finger protein 30 isoform 2 
TRIM56                0.047   tripartite motif-containing 56 
TRIM63                0.045   muscle specific ring finger protein 1 
TRIM33                0.041   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.041   tripartite motif-containing 33 protein isoform alpha...
TRIM24                0.040   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.040   transcriptional intermediary factor 1 alpha isoform ...
TRIM39                0.039   tripartite motif-containing 39 isoform 2 
TRIM39                0.039   tripartite motif-containing 39 isoform 1 
TRIM62                0.038   tripartite motif-containing 62 
TRIM55                0.037   tripartite motif-containing 55 isoform 3 
TRIM55                0.037   tripartite motif-containing 55 isoform 1 
TRIM55                0.037   tripartite motif-containing 55 isoform 2 
TRIM23                0.037   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.037   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.037   ADP-ribosylation factor domain protein 1 isoform alph...
TRIM54                0.036   ring finger protein 30 isoform 1 
TRIM59                0.035   tripartite motif-containing 59 
TRIM10                0.035   tripartite motif-containing 10 isoform 1 
TRIM7                 0.035   tripartite motif-containing 7 isoform 1 
TRIM10                0.035   tripartite motif-containing 10 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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