Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TRIM13 Sequence: fasta or formatted (407aa) NCBI GI: 16445412
Description:

ret finger protein 2 isoform 1

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt mRNA [407aa] ret finger protein 2 isoform 1
alt mRNA [407aa] ret finger protein 2 isoform 1
alt prot [410aa] ret finger protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         16           1
 C cysteine            3.7         15           2
 D aspartate           5.7         23           2
 E glutamate           7.4         30           2
 F phenylalanine       7.6         31           2
 G glycine             3.4         14           1
 H histidine           1.2          5           1
 I isoleucine          5.9         24           1
 K lysine              8.6         35           2
 L leucine            12.3         50           3
 M methionine          2.2          9           1
 N asparagine          4.2         17           2
 P proline             4.7         19           2
 Q glutamine           4.4         18           2
 R arginine            3.2         13           2
 S serine              6.9         28           2
 T threonine           5.9         24           1
 V valine              5.2         21           2
 W tryptophan          1.7          7           1
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ret finger protein 2 isoform 1 
TRIM13                1.000   ret finger protein 2 isoform 2 
TRIM13                1.000   ret finger protein 2 isoform 1 
TRIM13                1.000   ret finger protein 2 isoform 1 
TRIM59                0.228   tripartite motif-containing 59 
TRIM4                 0.093   tripartite motif protein TRIM4 isoform alpha 
TRIM63                0.092   muscle specific ring finger protein 1 
TRIM4                 0.089   tripartite motif protein TRIM4 isoform beta 
TRIM50                0.089   tripartite motif protein 50A 
TRIM54                0.085   ring finger protein 30 isoform 2 
TRIM68                0.084   ring finger protein 137 
TRIM55                0.084   tripartite motif-containing 55 isoform 3 
TRIM55                0.084   tripartite motif-containing 55 isoform 1 
TRIM55                0.084   tripartite motif-containing 55 isoform 2 
TRIM62                0.083   tripartite motif-containing 62 
TRIM72                0.078   tripartite motif-containing 72 
TRIM73                0.078   tripartite motif-containing 73 
TRIM74                0.077   tripartite motif-containing 74 
TRIM39                0.075   tripartite motif-containing 39 isoform 2 
TRIM39                0.075   tripartite motif-containing 39 isoform 1 
TRIM11                0.075   tripartite motif-containing 11 
TRIM60                0.075   ring finger protein 129 
TRIM54                0.075   ring finger protein 30 isoform 1 
TRIM22                0.073   tripartite motif-containing 22 
TRIM34                0.072   tripartite motif protein 34 isoform 1 
TRIM34                0.072   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.072   tripartite motif-containing 6 and tripartite motif-c...
TRIM31                0.071   tripartite motif protein 31 
TRIM7                 0.071   tripartite motif-containing 7 isoform 1 
TRIM10                0.071   tripartite motif-containing 10 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press