Guide to the Human Genome
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Name: MID2 Sequence: fasta or formatted (705aa) NCBI GI: 223890259
Description:

midline 2 isoform 2

Referenced in:

Fibronectin Family
Serine / Threonine Protein Phosphatases
Tripartite Motif Family

Other entries for this name:
alt prot [735aa] midline 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         40           2
 C cysteine            4.3         30           1
 D aspartate           4.7         33           2
 E glutamate           6.8         48           2
 F phenylalanine       3.8         27           1
 G glycine             3.7         26           2
 H histidine           3.3         23           1
 I isoleucine          6.1         43           2
 K lysine              5.8         41           2
 L leucine             9.2         65           3
 M methionine          2.7         19           1
 N asparagine          6.0         42           2
 P proline             5.0         35           2
 Q glutamine           4.4         31           2
 R arginine            5.1         36           2
 S serine              8.8         62           2
 T threonine           5.5         39           2
 V valine              5.7         40           2
 W tryptophan          1.0          7           1
 Y tyrosine            2.6         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   midline 2 isoform 2 
MID2                  0.989   midline 2 isoform 1 
MID1                  0.750   midline 1 
MID1                  0.750   midline 1 
MID1                  0.750   midline 1 
TRIM36                0.135   tripartite motif-containing 36 isoform 1 
TRIM46                0.127   tripartite motif-containing 46 
FSD1L                 0.125   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.125   fibronectin type III and SPRY domain containing 1-l...
FSD1                  0.123   fibronectin type III and SPRY domain containing 1 [H...
TRIM67                0.123   tripartite motif-containing 67 
TRIM9                 0.121   tripartite motif protein 9 isoform 1 
TRIM9                 0.097   tripartite motif protein 9 isoform 2 
TRIM25                0.084   tripartite motif-containing 25 
TRIM54                0.070   ring finger protein 30 isoform 1 
TRIM55                0.070   tripartite motif-containing 55 isoform 3 
TRIM55                0.070   tripartite motif-containing 55 isoform 1 
TRIM55                0.070   tripartite motif-containing 55 isoform 2 
FSD2                  0.069   fibronectin type III and SPRY domain containing 2 [H...
TRIM63                0.062   muscle specific ring finger protein 1 
TRIM54                0.058   ring finger protein 30 isoform 2 
TRIM8                 0.056   tripartite motif-containing 8 
TRIM42                0.055   tripartite motif-containing 42 
TRIM55                0.045   tripartite motif-containing 55 isoform 4 
TRIM23                0.045   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.045   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.045   ADP-ribosylation factor domain protein 1 isoform alph...
TRIM16                0.042   tripartite motif-containing 16 
TRIM33                0.040   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.040   tripartite motif-containing 33 protein isoform alpha...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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