Guide to the Human Genome
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Name: FAM166B Sequence: fasta or formatted (216aa) NCBI GI: 153791167
Description:

hypothetical protein LOC730112

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         12           1
 C cysteine            1.4          3           1
 D aspartate           2.8          6           2
 E glutamate           7.9         17           2
 F phenylalanine       4.2          9           2
 G glycine             8.3         18           1
 H histidine           2.3          5           1
 I isoleucine          3.2          7           1
 K lysine              3.2          7           1
 L leucine             7.4         16           2
 M methionine          1.9          4           1
 N asparagine          1.9          4           1
 P proline            13.9         30           2
 Q glutamine           6.5         14           1
 R arginine            6.5         14           2
 S serine              7.9         17           3
 T threonine           6.5         14           1
 V valine              5.1         11           2
 W tryptophan          1.4          3           1
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC730112 
FAM166A               0.093   hypothetical protein LOC401565 
NEK11                 0.026   NIMA-related kinase 11 isoform 2 
NEK11                 0.026   NIMA-related kinase 11 isoform 3 
NEK11                 0.026   NIMA-related kinase 11 isoform 1 
ATF7                  0.023   activating transcription factor 7 isoform 3 
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
SOBP                  0.019   sine oculis binding protein homolog 
ZNF207                0.019   zinc finger protein 207 isoform a 
ZMIZ2                 0.019   zinc finger, MIZ-type containing 2 isoform 1 
ZNF207                0.019   zinc finger protein 207 isoform c 
ZNF207                0.019   zinc finger protein 207 isoform b 
ATF7                  0.019   activating transcription factor 7 isoform 2 
C2orf70               0.019   hypothetical protein LOC339778 
AP3D1                 0.016   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.016   adaptor-related protein complex 3, delta 1 subunit ...
ZFHX3                 0.016   AT-binding transcription factor 1 
SCN5A                 0.016   voltage-gated sodium channel type V alpha isoform f...
WNK3                  0.016   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
APOB48R               0.016   apolipoprotein B48 receptor 
SEC23IP               0.016   Sec23-interacting protein p125 
EP400                 0.014   E1A binding protein p400 
TTN                   0.014   titin isoform N2-A 
TCERG1                0.014   transcription elongation regulator 1 isoform 2 [Homo...
PYGO2                 0.014   pygopus homolog 2 
USH1C                 0.012   harmonin isoform b3 
FNDC3A                0.012   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.012   fibronectin type III domain containing 3A isoform 2...
ORC2L                 0.012   origin recognition complex, subunit 2 
RNF25                 0.012   ring finger protein 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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