Guide to the Human Genome
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Name: C2orf70 Sequence: fasta or formatted (201aa) NCBI GI: 157502167
Description:

hypothetical protein LOC339778

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         11           2
 C cysteine            1.0          2           1
 D aspartate           2.5          5           1
 E glutamate           4.5          9           1
 F phenylalanine       6.5         13           1
 G glycine             5.0         10           2
 H histidine           4.0          8           1
 I isoleucine          0.5          1           1
 K lysine              6.0         12           3
 L leucine             8.5         17           3
 M methionine          3.0          6           1
 N asparagine          3.5          7           1
 P proline            10.4         21           2
 Q glutamine           4.5          9           2
 R arginine            8.5         17           1
 S serine              6.0         12           1
 T threonine           9.0         18           3
 V valine              4.5          9           1
 W tryptophan          1.0          2           1
 Y tyrosine            6.0         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC339778 
FAM166B               0.020   hypothetical protein LOC730112 
SEMA6D                0.012   semaphorin 6D isoform 1 precursor 
SEMA6D                0.012   semaphorin 6D isoform 4 precursor 
SEMA6D                0.012   semaphorin 6D isoform 3 precursor 
SEMA6D                0.012   semaphorin 6D isoform 2 precursor 
C2orf29               0.010   hypothetical protein LOC55571 
MLL4                  0.010   myeloid/lymphoid or mixed-lineage leukemia 4 
FAM166A               0.007   hypothetical protein LOC401565 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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