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Name: SCN5A Sequence: fasta or formatted (1962aa) NCBI GI: 237512982
Description:

voltage-gated sodium channel type V alpha isoform f

Referenced in:

Sodium Channels

Other entries for this name:
alt prot [2016aa] voltage-gated sodium channel type V alpha isoform c
alt prot [1998aa] voltage-gated sodium channel type V alpha isoform d
alt prot [1983aa] voltage-gated sodium channel type V alpha isoform e
alt prot [2015aa] voltage-gated sodium channel type V alpha isoform b
alt prot [2016aa] voltage-gated sodium channel type V alpha isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        127           2
 C cysteine            2.1         41           2
 D aspartate           4.6         91           2
 E glutamate           6.6        129           3
 F phenylalanine       6.3        123           2
 G glycine             5.8        113           2
 H histidine           1.4         27           2
 I isoleucine          6.3        123           3
 K lysine              4.2         83           3
 L leucine            11.6        228           3
 M methionine          3.5         69           2
 N asparagine          4.0         78           2
 P proline             5.1        101           4
 Q glutamine           3.3         64           2
 R arginine            5.2        102           3
 S serine              7.6        149           4
 T threonine           5.8        114           3
 V valine              5.9        116           3
 W tryptophan          1.5         30           2
 Y tyrosine            2.8         54           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-gated sodium channel type V alpha isoform f... 
SCN5A                 0.991   voltage-gated sodium channel type V alpha isoform c...
SCN5A                 0.990   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.988   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.979   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.973   voltage-gated sodium channel type V alpha isoform e...
SCN3A                 0.619   sodium channel, voltage-gated, type III, alpha isof...
SCN2A                 0.616   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.616   sodium channel, voltage-gated, type II, alpha isofor...
SCN2A                 0.616   sodium channel, voltage-gated, type II, alpha isofor...
SCN1A                 0.609   sodium channel, voltage-gated, type I, alpha 
SCN3A                 0.607   sodium channel, voltage-gated, type III, alpha isof...
SCN3A                 0.607   sodium channel, voltage-gated, type III, alpha isof...
SCN9A                 0.599   sodium channel, voltage-gated, type IX, alpha 
SCN10A                0.596   sodium channel, voltage-gated, type X, alpha 
SCN8A                 0.595   sodium channel, voltage gated, type VIII, alpha [Homo...
SCN4A                 0.441   voltage-gated sodium channel type 4 alpha 
LOC100294386          0.367   PREDICTED: similar to sodium channel, voltage-gated...
SCN11A                0.344   sodium channel, voltage-gated, type XI, alpha [Homo...
SCN7A                 0.285   sodium channel, voltage-gated, type VII, alpha [Hom...
CACNA1H               0.108   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.107   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1G               0.105   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.105   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.105   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.105   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.105   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.104   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.104   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.104   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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