Guide to the Human Genome
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Name: FAM166A Sequence: fasta or formatted (317aa) NCBI GI: 48717426
Description:

hypothetical protein LOC401565

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         14           1
 C cysteine            1.9          6           1
 D aspartate           5.0         16           1
 E glutamate           4.7         15           2
 F phenylalanine       5.0         16           2
 G glycine             6.9         22           1
 H histidine           3.8         12           1
 I isoleucine          3.5         11           1
 K lysine              4.4         14           1
 L leucine             7.9         25           2
 M methionine          2.2          7           1
 N asparagine          3.2         10           1
 P proline            12.6         40           3
 Q glutamine           6.9         22           2
 R arginine            5.7         18           2
 S serine              5.7         18           2
 T threonine           6.0         19           3
 V valine              3.8         12           1
 W tryptophan          1.6          5           1
 Y tyrosine            4.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401565 
FAM166B               0.061   hypothetical protein LOC730112 
RPP25                 0.021   ribonuclease P 25kDa subunit 
CCNK                  0.015   cyclin K isoform 1 
KLF10                 0.014   Kruppel-like factor 10 isoform b 
KLF10                 0.014   Kruppel-like factor 10 isoform a 
ZYX                   0.014   zyxin 
ZYX                   0.014   zyxin 
FIGN                  0.012   fidgetin 
SRRT                  0.012   arsenate resistance protein 2 isoform c 
SRRT                  0.012   arsenate resistance protein 2 isoform a 
PPP1R13L              0.012   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.012   protein phosphatase 1, regulatory subunit 13 like [H...
COL15A1               0.012   alpha 1 type XV collagen precursor 
FAM120A               0.012   oxidative stress-associated Src activator 
COL4A1                0.011   alpha 1 type IV collagen preproprotein 
SPEN                  0.011   spen homolog, transcriptional regulator 
PCDH15                0.011   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.011   protocadherin 15 isoform CD1-1 precursor 
SF3B4                 0.011   splicing factor 3b, subunit 4 
CUX2                  0.011   cut-like 2 
ADAMTS7               0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
WIPF1                 0.011   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.011   WAS/WASL interacting protein family, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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