Guide to the Human Genome
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Name: TRIM14 Sequence: fasta or formatted (253aa) NCBI GI: 15208669
Description:

tripartite motif protein TRIM14 isoform beta

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [442aa] tripartite motif protein TRIM14 isoform alpha
alt prot [442aa] tripartite motif protein TRIM14 isoform alpha
alt prot [442aa] tripartite motif protein TRIM14 isoform alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         21           2
 C cysteine            4.0         10           1
 D aspartate           4.0         10           1
 E glutamate           8.7         22           3
 F phenylalanine       2.4          6           2
 G glycine             4.7         12           1
 H histidine           2.8          7           1
 I isoleucine          3.2          8           1
 K lysine              5.9         15           2
 L leucine            11.9         30           3
 M methionine          1.6          4           1
 N asparagine          2.8          7           1
 P proline             5.1         13           1
 Q glutamine           7.1         18           3
 R arginine            6.7         17           2
 S serine              7.1         18           2
 T threonine           5.1         13           1
 V valine              6.3         16           1
 W tryptophan          1.2          3           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif protein TRIM14 isoform beta 
TRIM14                0.912   tripartite motif protein TRIM14 isoform alpha 
TRIM14                0.912   tripartite motif protein TRIM14 isoform alpha 
TRIM14                0.912   tripartite motif protein TRIM14 isoform alpha 
TRIM34                0.074   tripartite motif protein 34 isoform 3 
TRIM34                0.074   tripartite motif protein 34 isoform 1 
TRIM34                0.074   tripartite motif protein 34 isoform 1 
TRIM6                 0.074   tripartite motif-containing 6 isoform 2 
TRIM6                 0.074   tripartite motif-containing 6 isoform 1 
TRIM6-TRIM34          0.074   tripartite motif-containing 6 and tripartite motif-c...
TRIM39                0.074   tripartite motif-containing 39 isoform 2 
TRIM39                0.074   tripartite motif-containing 39 isoform 1 
TRIM63                0.072   muscle specific ring finger protein 1 
TRIM36                0.068   tripartite motif-containing 36 isoform 1 
TRIM5                 0.064   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.064   tripartite motif protein TRIM5 isoform gamma 
TRIM44                0.060   DIPB protein 
MID2                  0.060   midline 2 isoform 2 
MID2                  0.060   midline 2 isoform 1 
LOC646754             0.060   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.060   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.060   PREDICTED: tripartite motif-containing protein 64C-...
TRIM21                0.060   tripartite motif protein 21 
TRIM5                 0.060   tripartite motif protein TRIM5 isoform alpha 
TRIM65                0.055   tripartite motif-containing 65 
TRIM29                0.055   tripartite motif protein TRIM29 
TRIM46                0.053   tripartite motif-containing 46 
TRIM59                0.053   tripartite motif-containing 59 
TRIM50                0.051   tripartite motif protein 50A 
LOC646754             0.051   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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