Guide to the Human Genome
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Name: LOC646754 Sequence: fasta or formatted (447aa) NCBI GI: 239750044
Description:

PREDICTED: tripartite motif-containing protein 64C-like isoform 2

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [450aa] PREDICTED: tripartite motif-containing protein 64C-like isoform 2
alt mRNA [447aa] PREDICTED: tripartite motif-containing protein 64C-like isoform 1
alt prot [450aa] PREDICTED: tripartite motif-containing protein 64C-like isoform 1
alt prot [450aa] PREDICTED: tripartite motif-containing protein 64C-like isoform 1
alt mRNA [447aa] PREDICTED: tripartite motif-containing protein 64C-like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         18           2
 C cysteine            4.9         22           2
 D aspartate           6.3         28           2
 E glutamate           6.9         31           3
 F phenylalanine       4.9         22           2
 G glycine             3.6         16           1
 H histidine           2.9         13           1
 I isoleucine          4.7         21           1
 K lysine              4.3         19           2
 L leucine             8.5         38           2
 M methionine          2.9         13           1
 N asparagine          5.1         23           2
 P proline             5.4         24           2
 Q glutamine           4.9         22           2
 R arginine            5.6         25           2
 S serine              9.2         41           2
 T threonine           5.1         23           2
 V valine              6.3         28           1
 W tryptophan          1.8          8           1
 Y tyrosine            2.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: tripartite motif-containing protein 64C-... 
LOC646754             1.000   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             1.000   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.974   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.974   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.974   PREDICTED: tripartite motif-containing protein 64C-...
TRIM64                0.871   tripartite motif-containing 64 
LOC642446             0.870   PREDICTED: tripartite motif-containing protein 64B-...
LOC653192             0.418   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM43                0.417   tripartite motif-containing 43 
LOC283116             0.390   PREDICTED: similar to ring finger protein 18 isofor...
SPRYD5                0.380   SPRY domain containing 5 
LOC653111             0.364   PREDICTED: similar to ring finger protein 18 
TRIM49                0.363   ring finger protein 18 
LOC283116             0.354   PREDICTED: similar to ring finger protein 18 
LOC283116             0.354   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.354   PREDICTED: similar to ring finger protein 18 
LOC120824             0.347   PREDICTED: similar to hCG1802386 
LOC120824             0.347   PREDICTED: similar to hCG1802386 
LOC120824             0.345   PREDICTED: similar to hCG1802386 
LOC729384             0.343   hypothetical protein LOC729384 
LOC100134006          0.343   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.343   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.343   PREDICTED: similar to ring finger protein 18 
LOC399939             0.343   PREDICTED: similar to ring finger protein 18 
LOC100289112          0.340   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.340   tripartite motif-containing 77 
TRIM77                0.327   PREDICTED: tripartite motif-containing 77 
TRIM77                0.327   PREDICTED: tripartite motif-containing 77 
TRIML1                0.245   tripartite motif family-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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