Guide to the Human Genome
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Name: TRIM14 Sequence: fasta or formatted (442aa) NCBI GI: 15208667
Description:

tripartite motif protein TRIM14 isoform alpha

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt mRNA [442aa] tripartite motif protein TRIM14 isoform alpha
alt mRNA [442aa] tripartite motif protein TRIM14 isoform alpha
alt prot [253aa] tripartite motif protein TRIM14 isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         40           3
 C cysteine            3.4         15           1
 D aspartate           5.4         24           2
 E glutamate           6.8         30           3
 F phenylalanine       2.9         13           2
 G glycine             6.3         28           2
 H histidine           2.5         11           1
 I isoleucine          2.5         11           1
 K lysine              4.3         19           2
 L leucine            13.1         58           3
 M methionine          1.4          6           1
 N asparagine          1.6          7           1
 P proline             5.2         23           1
 Q glutamine           5.4         24           3
 R arginine            8.6         38           3
 S serine              6.3         28           2
 T threonine           5.2         23           1
 V valine              5.4         24           1
 W tryptophan          2.3         10           2
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif protein TRIM14 isoform alpha 
TRIM14                1.000   tripartite motif protein TRIM14 isoform alpha 
TRIM14                1.000   tripartite motif protein TRIM14 isoform alpha 
TRIM14                0.505   tripartite motif protein TRIM14 isoform beta 
TRIM39                0.114   tripartite motif-containing 39 isoform 2 
TRIM39                0.114   tripartite motif-containing 39 isoform 1 
TRIM7                 0.107   tripartite motif-containing 7 isoform 1 
TRIM41                0.099   tripartite motif-containing 41 isoform 1 
TRIM21                0.098   tripartite motif protein 21 
TRIM27                0.097   ret finger protein 
TRIM62                0.093   tripartite motif-containing 62 
TRIM11                0.090   tripartite motif-containing 11 
TRIM65                0.089   tripartite motif-containing 65 
TRIM25                0.089   tripartite motif-containing 25 
TRIM50                0.087   tripartite motif protein 50A 
TRIM58                0.087   tripartite motif-containing 58 
TRIM16                0.086   tripartite motif-containing 16 
TRIM34                0.084   tripartite motif protein 34 isoform 1 
TRIM34                0.084   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.084   tripartite motif-containing 6 and tripartite motif-c...
TRIM7                 0.081   tripartite motif-containing 7 isoform 2 
BSPRY                 0.081   B-box and SPRY domain containing 
TRIM7                 0.081   tripartite motif-containing 7 isoform 3 
TRIM7                 0.081   tripartite motif-containing 7 isoform 3 
TRIM7                 0.081   tripartite motif-containing 7 isoform 3 
MEFV                  0.077   Mediterranean fever protein 
BTN2A2                0.077   butyrophilin, subfamily 2, member A2 isoform b [Homo...
BTN2A2                0.077   butyrophilin, subfamily 2, member A2 isoform a 
TRIM38                0.076   tripartite motif-containing 38 
TRIML2                0.076   tripartite motif family-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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