Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: POMZP3 Sequence: fasta or formatted (115aa) NCBI GI: 23510406
Description:

POMZP3 fusion protein isoform 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [187aa] POMZP3 fusion protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          8           1
 C cysteine            2.6          3           1
 D aspartate           7.8          9           1
 E glutamate           6.1          7           3
 F phenylalanine       5.2          6           1
 G glycine             2.6          3           1
 H histidine           0.9          1           1
 I isoleucine          4.3          5           2
 K lysine              7.0          8           4
 L leucine             7.0          8           1
 M methionine          1.7          2           1
 N asparagine          3.5          4           1
 P proline             8.7         10           2
 Q glutamine           3.5          4           1
 R arginine            7.0          8           2
 S serine             12.2         14           2
 T threonine           6.1          7           1
 V valine              7.0          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POMZP3 fusion protein isoform 2 
POMZP3                1.000   POMZP3 fusion protein isoform 1 
POM121C               0.602   POM121 membrane glycoprotein (rat)-like 
LOC100292653          0.592   PREDICTED: similar to hCG1998564 
POM121                0.592   nuclear pore membrane protein 121 
ZP3                   0.291   zona pellucida glycoprotein 3 isoform 1 precursor [...
ZP3                   0.291   zona pellucida glycoprotein 3 isoform 2 
POM121L2              0.194   POM121 membrane glycoprotein-like 2 
POM121L12             0.078   POM121 membrane glycoprotein-like 12 
AFAP1L2               0.044   KIAA1914 protein isoform 1 
AFAP1L2               0.044   KIAA1914 protein isoform 2 
ASH1L                 0.034   absent, small, or homeotic 1-like 
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.024   protein tyrosine phosphatase, non-receptor type 3 i...
TBC1D10B              0.024   TBC1 domain family, member 10B 
LOC100294020          0.019   PREDICTED: similar to POM121-like 1, partial 
CAST                  0.019   calpastatin isoform l 
CAST                  0.019   calpastatin isoform k 
CAST                  0.019   calpastatin isoform j 
CAST                  0.019   calpastatin isoform i 
CAST                  0.019   calpastatin isoform h 
CAST                  0.019   calpastatin isoform g 
CAST                  0.019   calpastatin isoform f 
CAST                  0.019   calpastatin isoform e 
CAST                  0.019   calpastatin isoform c 
CAST                  0.019   calpastatin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press