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Search of human proteins with 110227594
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens] 397 e-111
gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens] 278 2e-75
gi|58218968 calmodulin 3 [Homo sapiens] 134 5e-32
gi|4502549 calmodulin 2 [Homo sapiens] 134 5e-32
gi|5901912 calmodulin 1 [Homo sapiens] 134 5e-32
gi|4885111 calmodulin-like 3 [Homo sapiens] 118 3e-27
gi|4757974 centrin 1 [Homo sapiens] 100 8e-22
gi|4757902 caltractin [Homo sapiens] 95 3e-20
gi|29568111 myosin regulatory light chain 9 isoform a [Homo sapi... 86 3e-17
gi|4507617 fast skeletal muscle troponin C [Homo sapiens] 85 3e-17
gi|222144328 myosin regulatory light chain MRCL2 isoform B [Homo... 84 8e-17
gi|5453740 myosin, light chain 12A, regulatory, non-sarcomeric [... 84 1e-16
gi|4507615 troponin C, slow [Homo sapiens] 84 1e-16
gi|222144326 myosin regulatory light chain MRCL2 isoform A [Homo... 83 1e-16
gi|222144324 myosin regulatory light chain MRCL2 isoform A [Homo... 83 1e-16
gi|15809016 myosin regulatory light chain MRCL2 isoform A [Homo ... 83 1e-16
gi|50897266 calmodulin-like 6 [Homo sapiens] 81 5e-16
gi|223278387 calmodulin-like 5 [Homo sapiens] 81 6e-16
gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi... 79 2e-15
gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap... 79 2e-15
gi|4505303 smooth muscle and non-muscle myosin alkali light chai... 79 2e-15
gi|169167243 PREDICTED: similar to myosin regulatory light chain... 79 3e-15
gi|88981341 PREDICTED: similar to myosin regulatory light chain ... 78 4e-15
gi|51464364 PREDICTED: similar to myosin regulatory light chain ... 78 4e-15
gi|46397403 centrin 3 [Homo sapiens] 76 2e-14
gi|17986258 myosin, light chain 6, alkali, smooth muscle and non... 75 4e-14
gi|88999583 myosin, light chain 6, alkali, smooth muscle and non... 75 5e-14
gi|94981553 slow cardiac myosin regulatory light chain 2 [Homo s... 74 8e-14
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 74 8e-14
gi|17986275 fast skeletal myosin alkali light chain 1 isoform 3f... 74 8e-14
>gi|110227594 calmodulin-like 4 isoform 1 [Homo sapiens]
Length = 196
Score = 397 bits (1021), Expect = e-111
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECF 60
MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECF
Sbjct: 1 MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECF 60
Query: 61 SLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQI 120
SLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQI
Sbjct: 61 SLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQI 120
Query: 121 KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV 180
KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV
Sbjct: 121 KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV 180
Query: 181 KYDEFIHKITLPGRDY 196
KYDEFIHKITLPGRDY
Sbjct: 181 KYDEFIHKITLPGRDY 196
>gi|110227596 calmodulin-like 4 isoform 2 [Homo sapiens]
Length = 149
Score = 278 bits (712), Expect = 2e-75
Identities = 149/196 (76%), Positives = 149/196 (76%), Gaps = 47/196 (23%)
Query: 1 MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECF 60
MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQIN
Sbjct: 1 MAAEHLLPGPPPSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQIN------ 54
Query: 61 SLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQI 120
DGNGELDFSTFLTIMHMQI
Sbjct: 55 -----------------------------------------DGNGELDFSTFLTIMHMQI 73
Query: 121 KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV 180
KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV
Sbjct: 74 KQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKV 133
Query: 181 KYDEFIHKITLPGRDY 196
KYDEFIHKITLPGRDY
Sbjct: 134 KYDEFIHKITLPGRDY 149
>gi|58218968 calmodulin 3 [Homo sapiens]
Length = 149
Score = 134 bits (337), Expect = 5e-32
Identities = 67/147 (45%), Positives = 98/147 (66%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
MA L+++QI E+KE FSL+DK G I +L MR LG +PT E+Q + DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
NG +DF FLT+M ++K D ++EI A + DK+ GY+ A++LR +T+LGEKLT +
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 164 EVDDLFREADIEPNGKVKYDEFIHKIT 190
EVD++ READI+ +G+V Y+EF+ +T
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
>gi|4502549 calmodulin 2 [Homo sapiens]
Length = 149
Score = 134 bits (337), Expect = 5e-32
Identities = 67/147 (45%), Positives = 98/147 (66%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
MA L+++QI E+KE FSL+DK G I +L MR LG +PT E+Q + DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
NG +DF FLT+M ++K D ++EI A + DK+ GY+ A++LR +T+LGEKLT +
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 164 EVDDLFREADIEPNGKVKYDEFIHKIT 190
EVD++ READI+ +G+V Y+EF+ +T
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
>gi|5901912 calmodulin 1 [Homo sapiens]
Length = 149
Score = 134 bits (337), Expect = 5e-32
Identities = 67/147 (45%), Positives = 98/147 (66%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
MA L+++QI E+KE FSL+DK G I +L MR LG +PT E+Q + DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
NG +DF FLT+M ++K D ++EI A + DK+ GY+ A++LR +T+LGEKLT +
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 164 EVDDLFREADIEPNGKVKYDEFIHKIT 190
EVD++ READI+ +G+V Y+EF+ +T
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMT 147
>gi|4885111 calmodulin-like 3 [Homo sapiens]
Length = 149
Score = 118 bits (296), Expect = 3e-27
Identities = 60/143 (41%), Positives = 92/143 (64%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
MA L+++Q+ E+KE FSL+DK G I +L MR LG +PT E++ + DG
Sbjct: 1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDG 60
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
NG +DF FL +M ++K D ++EI A + DK+ G+V A++LR +T LGEKL+ +
Sbjct: 61 NGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDE 120
Query: 164 EVDDLFREADIEPNGKVKYDEFI 186
EVD++ R AD + +G+V Y+EF+
Sbjct: 121 EVDEMIRAADTDGDGQVNYEEFV 143
Score = 40.8 bits (94), Expect = 7e-04
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 41 GPRMAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHG 100
G K D E +E F ++DK G + A +L M LG + EV ++
Sbjct: 71 GMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAAD 130
Query: 101 IDGNGELDFSTFLTIM 116
DG+G++++ F+ ++
Sbjct: 131 TDGDGQVNYEEFVRVL 146
>gi|4757974 centrin 1 [Homo sapiens]
Length = 172
Score = 100 bits (249), Expect = 8e-22
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 30 SGSSKPTGSSRGPRMAKF----LSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGA 85
SG KP+ +S G + L++DQ E +E F L+D G I A +L VAMR LG
Sbjct: 3 SGFKKPSAASTGQKRKVAPKPELTEDQKQEVREAFDLFDVDGSGTIDAKELKVAMRALGF 62
Query: 86 SPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVM 145
P E+++ + +G G++ F+ FL +M ++ ++D K+EIL A + D ++ G +
Sbjct: 63 EPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKIS 122
Query: 146 ASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEFI 186
+L+ LGE LT +E+ ++ EAD + +G+V +EF+
Sbjct: 123 FKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFL 163
Score = 38.9 bits (89), Expect = 0.003
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 123 EDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKY 182
ED K+E+ A + D + G + A +L+ + +LG + +E+ + E D E GK+ +
Sbjct: 27 EDQKQEVREAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISF 86
Query: 183 DEFIHKIT 190
++F+ +T
Sbjct: 87 NDFLAVMT 94
Score = 38.5 bits (88), Expect = 0.004
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 46 KFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNG 105
K +D E + F L+D + GKI +L LG + T E+Q + DG+G
Sbjct: 96 KMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDG 155
Query: 106 ELDFSTFLTIM 116
E++ FL IM
Sbjct: 156 EVNEEEFLRIM 166
>gi|4757902 caltractin [Homo sapiens]
Length = 172
Score = 95.1 bits (235), Expect = 3e-20
Identities = 47/139 (33%), Positives = 81/139 (58%)
Query: 48 LSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGEL 107
L+++Q E +E F L+D G I +L VAMR LG P E+++ + +G G++
Sbjct: 25 LTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKM 84
Query: 108 DFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDD 167
+F FLT+M ++ ++D K+EIL A + D ++ G + +L+ LGE LT +E+ +
Sbjct: 85 NFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQE 144
Query: 168 LFREADIEPNGKVKYDEFI 186
+ EAD + +G+V EF+
Sbjct: 145 MIDEADRDGDGEVSEQEFL 163
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 46 KFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNG 105
K +D E + F L+D + GKI +L + LG + T E+Q + DG+G
Sbjct: 96 KMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDG 155
Query: 106 ELDFSTFLTIM 116
E+ FL IM
Sbjct: 156 EVSEQEFLRIM 166
Score = 35.0 bits (79), Expect = 0.041
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 123 EDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKY 182
E+ K+EI A + D + G + +L+ + +LG + +E+ + E D E GK+ +
Sbjct: 27 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 86
Query: 183 DEFIHKIT 190
+F+ +T
Sbjct: 87 GDFLTVMT 94
>gi|29568111 myosin regulatory light chain 9 isoform a [Homo
sapiens]
Length = 172
Score = 85.5 bits (210), Expect = 3e-17
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 50 QDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDF 109
Q QI E+KE F++ D+ + G I DL + LG +PT +L+ + G ++F
Sbjct: 28 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT----DEYLEGMMSEAPGPINF 83
Query: 110 STFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLF 169
+ FLT+ ++ DP+ I A D+E G++ LR LT++G++ T +EVD+++
Sbjct: 84 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 143
Query: 170 READIEPNGKVKYDEF 185
REA I+ G Y EF
Sbjct: 144 REAPIDKKGNFNYVEF 159
>gi|4507617 fast skeletal muscle troponin C [Homo sapiens]
Length = 160
Score = 85.1 bits (209), Expect = 3e-17
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 47 FLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGE 106
+LS++ I E+K F ++D G I +L MR LG +PT E+ ++ DG+G
Sbjct: 11 YLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGT 70
Query: 107 LDFSTFLTIMHMQIKQE---DPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
+DF FL +M Q+K++ ++E+ + D+ GY+ +L + GE +T +
Sbjct: 71 IDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDE 130
Query: 164 EVDDLFREADIEPNGKVKYDEFI 186
E++ L ++ D +G++ +DEF+
Sbjct: 131 EIESLMKDGDKNNDGRIDFDEFL 153
Score = 37.0 bits (84), Expect = 0.011
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 55 EYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLT 114
E ECF ++D+ G I +L R G T E++ ++ + +G +DF FL
Sbjct: 95 ELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLK 154
Query: 115 IM 116
+M
Sbjct: 155 MM 156
>gi|222144328 myosin regulatory light chain MRCL2 isoform B [Homo
sapiens]
Length = 154
Score = 84.0 bits (206), Expect = 8e-17
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
M Q QI E+KE F++ D+ + G I DL + LG +PT + + +
Sbjct: 4 MFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMN----EA 59
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
G ++F+ FLT+ ++ DP+ I A D+E G + LR LT++G++ T +
Sbjct: 60 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 119
Query: 164 EVDDLFREADIEPNGKVKYDEF 185
EVD+L+REA I+ G Y EF
Sbjct: 120 EVDELYREAPIDKKGNFNYIEF 141
>gi|5453740 myosin, light chain 12A, regulatory, non-sarcomeric
[Homo sapiens]
Length = 171
Score = 83.6 bits (205), Expect = 1e-16
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 50 QDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDF 109
Q QI E+KE F++ D+ + G I DL + LG +PT +L + G ++F
Sbjct: 27 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT----DEYLDAMMNEAPGPINF 82
Query: 110 STFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLF 169
+ FLT+ ++ DP+ I A D+E G + LR LT++G++ T +EVD+L+
Sbjct: 83 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 142
Query: 170 READIEPNGKVKYDEF 185
REA I+ G Y EF
Sbjct: 143 REAPIDKKGNFNYIEF 158
>gi|4507615 troponin C, slow [Homo sapiens]
Length = 161
Score = 83.6 bits (205), Expect = 1e-16
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 4/143 (2%)
Query: 48 LSQDQINEYKECFSLYDK-QQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGE 106
L+++Q NE+K F ++ + G I +L MR LG +PTP E+Q + DG+G
Sbjct: 12 LTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGT 71
Query: 107 LDFSTFLTIMHMQIKQEDPKK---EILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
+DF FL +M +K + K E+ M DK GY+ +L+ L + GE +T
Sbjct: 72 VDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITED 131
Query: 164 EVDDLFREADIEPNGKVKYDEFI 186
++++L ++ D +G++ YDEF+
Sbjct: 132 DIEELMKDGDKNNDGRIDYDEFL 154
>gi|222144326 myosin regulatory light chain MRCL2 isoform A [Homo
sapiens]
Length = 172
Score = 83.2 bits (204), Expect = 1e-16
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 50 QDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDF 109
Q QI E+KE F++ D+ + G I DL + LG +PT + + + G ++F
Sbjct: 28 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMN----EAPGPINF 83
Query: 110 STFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLF 169
+ FLT+ ++ DP+ I A D+E G + LR LT++G++ T +EVD+L+
Sbjct: 84 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 143
Query: 170 READIEPNGKVKYDEF 185
REA I+ G Y EF
Sbjct: 144 REAPIDKKGNFNYIEF 159
>gi|222144324 myosin regulatory light chain MRCL2 isoform A [Homo
sapiens]
Length = 172
Score = 83.2 bits (204), Expect = 1e-16
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 50 QDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDF 109
Q QI E+KE F++ D+ + G I DL + LG +PT + + + G ++F
Sbjct: 28 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMN----EAPGPINF 83
Query: 110 STFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLF 169
+ FLT+ ++ DP+ I A D+E G + LR LT++G++ T +EVD+L+
Sbjct: 84 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 143
Query: 170 READIEPNGKVKYDEF 185
REA I+ G Y EF
Sbjct: 144 REAPIDKKGNFNYIEF 159
>gi|15809016 myosin regulatory light chain MRCL2 isoform A [Homo
sapiens]
Length = 172
Score = 83.2 bits (204), Expect = 1e-16
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 50 QDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDF 109
Q QI E+KE F++ D+ + G I DL + LG +PT + + + G ++F
Sbjct: 28 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMN----EAPGPINF 83
Query: 110 STFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLF 169
+ FLT+ ++ DP+ I A D+E G + LR LT++G++ T +EVD+L+
Sbjct: 84 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 143
Query: 170 READIEPNGKVKYDEF 185
REA I+ G Y EF
Sbjct: 144 REAPIDKKGNFNYIEF 159
>gi|50897266 calmodulin-like 6 [Homo sapiens]
Length = 181
Score = 81.3 bits (199), Expect = 5e-16
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 1/148 (0%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
M + LS +QI EYK F ++D++ G++K +L M LG +PT E+ + D
Sbjct: 26 MTERLSAEQIKEYKGVFEMFDEEGNGEVKTGELEWLMSLLGINPTKSELASMAKDVDRDN 85
Query: 104 NGELDFSTFLTIMHM-QIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTH 162
G + FL +M + K ++ + E+ A + DKE KGY+ + L+ L + GE L
Sbjct: 86 KGFFNCDGFLALMGVYHEKAQNQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNE 145
Query: 163 KEVDDLFREADIEPNGKVKYDEFIHKIT 190
E + + +EAD + + + Y+EF+ +T
Sbjct: 146 VEAEQMMKEADKDGDRTIDYEEFVAMMT 173
>gi|223278387 calmodulin-like 5 [Homo sapiens]
Length = 146
Score = 80.9 bits (198), Expect = 6e-16
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
MA L+ ++ +YK+ FS D G I A +L A++ G + + ++++ + DG
Sbjct: 1 MAGELTPEEEAQYKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDG 60
Query: 104 NGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHK 163
+GE+ F FLT K +++ +A D++ G++ +LR + LG+ L +
Sbjct: 61 DGEISFQEFLTAAK---KARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQE 117
Query: 164 EVDDLFREADIEPNGKVKYDEF 185
E+D + READ++ +G+V Y+EF
Sbjct: 118 ELDAMIREADVDQDGRVNYEEF 139
Score = 33.9 bits (76), Expect = 0.091
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 132 AMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEFI 186
A VD + G + A +L + L + G+ L+ ++ L E D + +G++ + EF+
Sbjct: 16 AFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFL 70
>gi|4557038 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 79.3 bits (194), Expect = 2e-15
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 42 PRMAKF-LSQDQINEYKECFSLYDKQQRGKIKAT--DLMVAMRCLGASPTPGEVQRHLQT 98
P+ K + DQI E+KE FSL+D+ G++K T +R LG +PT EV R L
Sbjct: 41 PKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGK 100
Query: 99 HGIDGNGE--LDFSTFLTIMH--MQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLT 154
+ LDF TFL I+ + K++ ++ + + + DKE G VM ++LR L
Sbjct: 101 PKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLA 160
Query: 155 SLGEKLTHKEVDDLFREADIEPNGKVKYDEFIHKI 189
+LGEK+T EV+ L + + NG + Y+ F+ I
Sbjct: 161 TLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHI 194
>gi|50845428 atrial/embryonic alkali myosin light chain [Homo
sapiens]
Length = 197
Score = 79.3 bits (194), Expect = 2e-15
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 42 PRMAKF-LSQDQINEYKECFSLYDKQQRGKIKAT--DLMVAMRCLGASPTPGEVQRHLQT 98
P+ K + DQI E+KE FSL+D+ G++K T +R LG +PT EV R L
Sbjct: 41 PKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGK 100
Query: 99 HGIDGNGE--LDFSTFLTIMH--MQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLT 154
+ LDF TFL I+ + K++ ++ + + + DKE G VM ++LR L
Sbjct: 101 PKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLA 160
Query: 155 SLGEKLTHKEVDDLFREADIEPNGKVKYDEFIHKI 189
+LGEK+T EV+ L + + NG + Y+ F+ I
Sbjct: 161 TLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHI 194
>gi|4505303 smooth muscle and non-muscle myosin alkali light chain
6B [Homo sapiens]
Length = 208
Score = 79.0 bits (193), Expect = 2e-15
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 5/145 (3%)
Query: 49 SQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGID--GNGE 106
++DQ+ E+KE F L+D+ GKI + MR LG +PT EV + L D +
Sbjct: 62 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRR 121
Query: 107 LDFSTFLTIMHMQIKQ--EDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKE 164
+DF TFL ++ K + ++ L + DKE G VM ++LR LT+LGEK+T +E
Sbjct: 122 VDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEE 181
Query: 165 VDDLFREADIEPNGKVKYDEFIHKI 189
V+ + + + NG + Y+ F+ I
Sbjct: 182 VETVLAGHE-DSNGCINYEAFLKHI 205
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
+AK Q +Y E F ++DK+ GK+ +L + LG T EV+ L H D
Sbjct: 134 VAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHE-DS 192
Query: 104 NGELDFSTFL 113
NG +++ FL
Sbjct: 193 NGCINYEAFL 202
>gi|169167243 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 78.6 bits (192), Expect = 3e-15
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 12 PSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECFSLYDKQQRGKI 71
P L++ +E GK T++ +P ++ ++ Q QI E+KE F++ D+ + G I
Sbjct: 202 PELSNHHVEQKGKTTKK-----RPQCATS--KVFATFDQSQIQEFKEAFNMIDQNRDGFI 254
Query: 72 KATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPKKEILL 131
DL + LG +PT + + + G ++F+ L + ++ DP+ I
Sbjct: 255 SKEDLHGMLASLGKNPTDACLDAVMN----EAPGPINFTMLLAMFGKKLNGTDPEDVIRN 310
Query: 132 AMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEF 185
A D+E G + LR LT++G++ T +EVD+L+ EA I+ G Y EF
Sbjct: 311 AFACFDEEATGTIQEDYLRELLTTVGDQFTDEEVDELYTEASIDKKGNFNYIEF 364
>gi|88981341 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 78.2 bits (191), Expect = 4e-15
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 12 PSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECFSLYDKQQRGKI 71
P L++ +E GK T++ +P ++ ++ Q QI E+KE F++ D+ + G I
Sbjct: 202 PELSNHHVEQKGKTTKK-----RPQCATS--KVFATFDQSQIQEFKEAFNMIDQNRDGFI 254
Query: 72 KATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPKKEILL 131
DL + LG +PT + + + G ++F+ L + ++ DP+ I
Sbjct: 255 SKEDLHGMLASLGKNPTDACLDAVMN----EAPGPINFTMLLAMFGKKLNGTDPEDVIRN 310
Query: 132 AMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEF 185
A D+E G + LR LT++G++ T +EVD+L+ EA I+ G Y EF
Sbjct: 311 AFACFDEEATGTIQEDYLRELLTTVGDQFTDEEVDELYTEAPIDKKGNFNYIEF 364
>gi|51464364 PREDICTED: similar to myosin regulatory light chain
MRCL2 [Homo sapiens]
Length = 377
Score = 78.2 bits (191), Expect = 4e-15
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 12 PSLADFRLEAGGKGTERGSGSSKPTGSSRGPRMAKFLSQDQINEYKECFSLYDKQQRGKI 71
P L++ +E GK T++ +P ++ ++ Q QI E+KE F++ D+ + G I
Sbjct: 202 PELSNHHVEQKGKTTKK-----RPQCATS--KVFATFDQSQIQEFKEAFNMIDQNRDGFI 254
Query: 72 KATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPKKEILL 131
DL + LG +PT + + + G ++F+ L + ++ DP+ I
Sbjct: 255 SKEDLHGMLASLGKNPTDACLDAVMN----EAPGPINFTMLLAMFGKKLNGTDPEDVIRN 310
Query: 132 AMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVKYDEF 185
A D+E G + LR LT++G++ T +EVD+L+ EA I+ G Y EF
Sbjct: 311 AFACFDEEATGTIQEDYLRELLTTVGDQFTDEEVDELYTEAPIDKKGNFNYIEF 364
>gi|46397403 centrin 3 [Homo sapiens]
Length = 167
Score = 76.3 bits (186), Expect = 2e-14
Identities = 43/143 (30%), Positives = 75/143 (52%)
Query: 48 LSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGEL 107
LS++Q E K+ F L+D + I +L VAMR LG +V + L+ + + G++
Sbjct: 22 LSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADVLKILKDYDREATGKI 81
Query: 108 DFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDD 167
F F ++ I + DP +EIL A + D + G + +LR LGE ++ +E+
Sbjct: 82 TFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRA 141
Query: 168 LFREADIEPNGKVKYDEFIHKIT 190
+ E D + +G++ +EFI +T
Sbjct: 142 MIEEFDKDGDGEINQEEFIAIMT 164
>gi|17986258 myosin, light chain 6, alkali, smooth muscle and
non-muscle isoform 1 [Homo sapiens]
Length = 151
Score = 75.1 bits (183), Expect = 4e-14
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 49 SQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNG--E 106
++DQ E+KE F L+D+ GKI + MR LG +PT EV + L D
Sbjct: 5 TEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKV 64
Query: 107 LDFSTFLTIMHMQIKQED--PKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKE 164
LDF FL ++ K +D ++ + + + DKE G VM +++R L +LGEK+T +E
Sbjct: 65 LDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEE 124
Query: 165 VDDLFREADIEPNGKVKYDEFIHKI 189
V+ L + + NG + Y+ F+ I
Sbjct: 125 VEMLVAGHE-DSNGCINYEAFVRHI 148
Score = 31.6 bits (70), Expect = 0.45
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
+AK Q +Y E ++DK+ G + ++ + LG T EV+ + H D
Sbjct: 77 VAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHE-DS 135
Query: 104 NGELDFSTFL 113
NG +++ F+
Sbjct: 136 NGCINYEAFV 145
>gi|88999583 myosin, light chain 6, alkali, smooth muscle and
non-muscle isoform 2 [Homo sapiens]
Length = 151
Score = 74.7 bits (182), Expect = 5e-14
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Query: 49 SQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNG--E 106
++DQ E+KE F L+D+ GKI + MR LG +PT EV + L D
Sbjct: 5 TEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKV 64
Query: 107 LDFSTFLTIMHMQIKQED--PKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKE 164
LDF FL ++ K +D ++ + + + DKE G VM +++R L +LGEK+T +E
Sbjct: 65 LDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEE 124
Query: 165 VDDLFREADIEPNGKVKYDEFIHKI 189
V+ L + + NG + Y+E + +
Sbjct: 125 VEMLVAGHE-DSNGCINYEELVRMV 148
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 44 MAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDG 103
+AK Q +Y E ++DK+ G + ++ + LG T EV+ + H D
Sbjct: 77 VAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHE-DS 135
Query: 104 NGELDFSTFLTIM 116
NG +++ + ++
Sbjct: 136 NGCINYEELVRMV 148
>gi|94981553 slow cardiac myosin regulatory light chain 2 [Homo
sapiens]
Length = 166
Score = 73.9 bits (180), Expect = 8e-14
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 33 SKPTGSSRGPRMAKFLSQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEV 92
+K + Q QI E+KE F++ D+ + G I DL LG E
Sbjct: 6 AKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNE- 64
Query: 93 QRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSK 152
+ + G ++F+ FLT+ ++K DP++ IL A + D E KG + A +R
Sbjct: 65 --EIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREM 122
Query: 153 LTSLGEKLTHKEVDDLFREADIEPNGKVKYDEFIHKIT 190
LT+ E+ + +EVD +F + G + Y +H IT
Sbjct: 123 LTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIIT 160
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 73.9 bits (180), Expect = 8e-14
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 28 RGSGSSKPTGSSRG--------PRMAKFLSQD------QINEYKECFSLYDKQQRGKIKA 73
RG G S P +S P ++ QD +I E +E F +DK + G I
Sbjct: 188 RGRGDSVPAAASEADPFLHRLRPMLSSAFGQDRSLRPEEIEELREAFREFDKDKDGYINC 247
Query: 74 TDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIKQEDPK----KEI 129
DL MR +G PT E+ Q ++ G +DF F+ +M ++ E KE+
Sbjct: 248 RDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKEL 307
Query: 130 LLAMLMVDKEKKGYVMASDLRSKLTS-LGEKLTHKEVDDLFREADIEPNGKVKYDEFIHK 188
A D G + S+LR + LG ++ H++++++ R+ D+ +G+V ++EF+
Sbjct: 308 RDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 367
Query: 189 IT 190
++
Sbjct: 368 MS 369
>gi|17986275 fast skeletal myosin alkali light chain 1 isoform 3f
[Homo sapiens]
Length = 150
Score = 73.9 bits (180), Expect = 8e-14
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 49 SQDQINEYKECFSLYDKQQRGKIKATDLMVAMRCLGASPTPGEVQRHLQTHGIDGNGEL- 107
S DQI E+KE F L+D+ KI + + +R LG +PT EV++ L G N EL
Sbjct: 4 SADQIAEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVL---GNPSNEELN 60
Query: 108 ----DFSTFLTIMHMQIKQEDPK--KEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLT 161
+F FL +M +D ++ + + + DKE G VM ++LR L +LGEK+
Sbjct: 61 AKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMK 120
Query: 162 HKEVDDLFREADIEPNGKVKYDEFIHKI 189
+EV+ L + + NG + Y+ F+ I
Sbjct: 121 EEEVEALMAGQE-DSNGCINYEAFVKHI 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,541,087
Number of Sequences: 37866
Number of extensions: 391754
Number of successful extensions: 1999
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 258
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.