Guide to the Human Genome
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Search of human proteins with 15011916

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
         (217 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]       473   e-134
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]        473   e-134
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    87   1e-17
gi|109452587 family with sequence similarity 98, member B isofor...    81   8e-16
gi|12056465 fibrillarin [Homo sapiens]                                 71   6e-13
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    70   1e-12
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    70   1e-12
gi|55956788 nucleolin [Homo sapiens]                                   69   2e-12
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    68   7e-12
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    68   7e-12
gi|119395750 keratin 1 [Homo sapiens]                                  64   8e-11
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    61   8e-10
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           60   1e-09
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          60   1e-09
gi|195972866 keratin 10 [Homo sapiens]                                 60   1e-09
gi|47132620 keratin 2 [Homo sapiens]                                   60   1e-09
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi...    59   2e-09
gi|55956899 keratin 9 [Homo sapiens]                                   59   4e-09
gi|131412228 keratin 13 isoform b [Homo sapiens]                       57   9e-09
gi|131412225 keratin 13 isoform a [Homo sapiens]                       57   9e-09
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...    57   9e-09
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    57   1e-08
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso...    57   1e-08
gi|56699482 hypothetical protein LOC25940 [Homo sapiens]               57   1e-08
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s...    57   1e-08
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    57   1e-08
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    57   1e-08
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    57   1e-08
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ...    57   2e-08
gi|109148552 keratin 3 [Homo sapiens]                                  57   2e-08

>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
          Length = 217

 Score =  473 bits (1216), Expect = e-134
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
           MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK
Sbjct: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60

Query: 61  GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL 120
           GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL
Sbjct: 61  GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL 120

Query: 121 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR 180
           RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR
Sbjct: 121 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR 180

Query: 181 GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
           GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217


>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
          Length = 217

 Score =  473 bits (1216), Expect = e-134
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
           MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK
Sbjct: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60

Query: 61  GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL 120
           GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL
Sbjct: 61  GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQL 120

Query: 121 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR 180
           RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR
Sbjct: 121 RDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGR 180

Query: 181 GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
           GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH
Sbjct: 181 GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 88/255 (34%), Positives = 108/255 (42%), Gaps = 65/255 (25%)

Query: 1   MSFRGGGRGGFNR-----GGGGGGF---NRGGSSNHFRGGGGGGGGGNF----------- 41
           MS  GG  GG+       GGG GG+   +RGG      GGGGGGGGG +           
Sbjct: 184 MSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG 243

Query: 42  RGGGRGGFGRGGG--RGGFNK---GQDQGPPERVVLLGEFLHPCEDDIVCKCT------- 89
           RGGGRGG G  GG  RGGFNK    +DQG            H  E D     T       
Sbjct: 244 RGGGRGGRGGMGGSDRGGFNKFGGPRDQGSR----------HDSEQDNSDNNTIFVQGLG 293

Query: 90  ---TDENKVPYFNAPVYLENKEQIGK------VDEIFGQLRDFYFSVKLSENMKASSFKK 140
              T E+   YF     ++  ++ G+       D   G+L+       +S +   S+   
Sbjct: 294 ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG---EATVSFDDPPSAKAA 350

Query: 141 LQKFYIDPYKLLPLQ-RFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGG--GRGGGFRGGR 197
           +  F    +   P++  F  R        R     G G GRGG GRGG  GRGG   GG 
Sbjct: 351 IDWFDGKEFSGNPIKVSFATR--------RADFNRGGGNGRGGRGRGGPMGRGGYGGGGS 402

Query: 198 GGGG-GGFRGGRGGG 211
           GGGG GGF  G GGG
Sbjct: 403 GGGGRGGFPSGGGGG 417



 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 83/275 (30%), Positives = 103/275 (37%), Gaps = 89/275 (32%)

Query: 6   GGRGGFNRGGGGGGF----------------------------------NRGGSSNHFRG 31
           GG GG   GGGGG +                                  +RGG      G
Sbjct: 166 GGGGG---GGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSG 222

Query: 32  GGGGGGGGNF-----------RGGGRGGFGRGGG--RGGFNK---GQDQGPPERVVLLGE 75
           GGGGGGGG +           RGGGRGG G  GG  RGGFNK    +DQG          
Sbjct: 223 GGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGS--------- 273

Query: 76  FLHPCEDDIVCKCT----------TDENKVPYFNAPVYLENKEQIGK------VDEIFGQ 119
             H  E D     T          T E+   YF     ++  ++ G+       D   G+
Sbjct: 274 -RHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK 332

Query: 120 LRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRG-- 177
           L+       +S +   S+   +  F    +   P++        +     G GRGGRG  
Sbjct: 333 LKG---EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRG 389

Query: 178 -----GGRGGGGRGGGRGGGFRGGRGGGGGGFRGG 207
                GG GGGG GGG  GGF  G GGGGG  R G
Sbjct: 390 GPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 34/67 (50%), Positives = 35/67 (52%), Gaps = 16/67 (23%)

Query: 163 GEKGPPRGGGRGGRG----GGRGGGGRGGGRGGGFRG-----------GRGGGGGGFRGG 207
           G +    GGG GG G    GGRG GG GGG GGG  G           GRGGG GG RGG
Sbjct: 195 GNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGG-RGG 253

Query: 208 RGGGFRG 214
            GG  RG
Sbjct: 254 MGGSDRG 260



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 31/58 (53%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GGG GG + GG  G   RGG   + RGG  G GG   RGG RGG G GG RGGF  G+
Sbjct: 456 GGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGD--RGGFRGGRG-GGDRGGFGPGK 510



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 35/61 (57%), Positives = 37/61 (60%), Gaps = 14/61 (22%)

Query: 169 RGG-GRGGRGGGRGGGGRG----------GGRGGGFRGGRGGGGGGFRGG--RGGGFRGR 215
           RGG GRGG GGG GGGG G           GRGGG RGGRGG GG  RGG  + GG R +
Sbjct: 213 RGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGG-RGGRGGMGGSDRGGFNKFGGPRDQ 271

Query: 216 G 216
           G
Sbjct: 272 G 272



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 24/84 (28%)

Query: 5   GGGRGGFNRGGGGGG-------------------FNRGGSSNHFRG----GGGGGGGGNF 41
           GGGRGGF  GGGGGG                   F+     N  +     G GGG GG+ 
Sbjct: 404 GGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSH 463

Query: 42  RGGGRGGFGRGGGRGGFNKGQDQG 65
            GG  G   R GGRGG+++G  +G
Sbjct: 464 MGGNYGD-DRRGGRGGYDRGGYRG 486



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 40/119 (33%), Positives = 44/119 (36%), Gaps = 57/119 (47%)

Query: 4   RGG-GRGG-FNRGGGGGGFNRGGSSNHFRGGGGGGGG----------------------- 38
           RGG GRGG   RGG GGG + GG    F  GGGGGGG                       
Sbjct: 383 RGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRN 442

Query: 39  --------------------------GNFRGGGRGGF------GRGGGRGGFNKGQDQG 65
                                     G+ R GGRGG+      GRGG RGGF  G+  G
Sbjct: 443 ECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGG 501



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 32/66 (48%), Positives = 33/66 (50%), Gaps = 19/66 (28%)

Query: 170 GGGRGGRGGGR---GGGGRGG---------GRGGGFRGGRGGGGGGFRG-------GRGG 210
           GGG GG  G +   GGGG GG         GRGG   GG GGGGG  R        GRGG
Sbjct: 187 GGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGG 246

Query: 211 GFRGRG 216
           G  GRG
Sbjct: 247 GRGGRG 252



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 29/50 (58%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 163 GEKGPPRGGGRGG--RGGGRG-GGGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           G  G  R GGRGG  RGG RG GG RGG RGG   G RGG G G    RG
Sbjct: 466 GNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRG 515



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 14/60 (23%)

Query: 170 GGGRGGRGGGR---------GGGGRGGGRGGGFRGGRGGGGGGF----RGGRGGGFRGRG 216
           GGG GG GGG           GGG GGG G   + G GGG GG+    RGGRG G  G G
Sbjct: 166 GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSG-GGGSGGYGQQDRGGRGRGGSGGG 224



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 36/95 (37%), Positives = 40/95 (42%), Gaps = 45/95 (47%)

Query: 167 PPRGGGR-------GGRGGGRGGGGR----------GGGRGGGF---------------- 193
           PP+G G+        G GGG GGGG           GGG GGG+                
Sbjct: 151 PPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQ 210

Query: 194 --RGGRG-GGGGGFRGGRGGGF---------RGRG 216
             RGGRG GG GG  GG GGG+         RGRG
Sbjct: 211 QDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRG 245



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 26/49 (53%), Positives = 28/49 (57%), Gaps = 11/49 (22%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRG 52
           R GGRGG++RGG  G   RGG    FRGG G        GG RGGFG G
Sbjct: 472 RRGGRGGYDRGGYRG---RGGDRGGFRGGRG--------GGDRGGFGPG 509



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           G +  +N   G G  N+  SS+   GGGGGGGGG   G  +     GGG GG    QDQ
Sbjct: 144 GQQQSYNPPQGYGQQNQYNSSS---GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQ 199


>gi|109452587 family with sequence similarity 98, member B isoform 1
           [Homo sapiens]
          Length = 433

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 37/51 (72%), Positives = 39/51 (76%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           PP +K    GGGRGG GGG GGGGRGGG GGG RGG GGGGGG+ GG GGG
Sbjct: 323 PPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGG 373



 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 42/73 (57%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query: 148 PYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGG-GRGGGFRGGRGGGGGGFRG 206
           P ++ P Q+      G  G   GGG GGRGGG GGGGRGG G GGG  GG GGGGGG+ G
Sbjct: 319 PPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGG 378

Query: 207 GRG---GGFRGRG 216
           G G   GGF+GRG
Sbjct: 379 GGGGGRGGFQGRG 391



 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 38/61 (62%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG GG  RGGGGGG  RGG    + GGGGG GGG   GGG GG G GGGRGGF    D 
Sbjct: 339 GGGGGGGGRGGGGGGGGRGG----WGGGGGGWGGGGGGGGGWGG-GGGGGRGGFQGRGDY 393

Query: 65  G 65
           G
Sbjct: 394 G 394



 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 4/58 (6%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG----GRGGGFRGRG 216
           G  G   GGGRGG GGG GG G GGG GGG+ GG GGG GGF+G    G  GG+ GRG
Sbjct: 346 GRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRG 403



 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 36/65 (55%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG----GGRGGFGRGGGRGGFNK 60
           GGGRGG+  GGGGGG+  GG      GGGGGGG G F+G    GGRGG+G  GG GG   
Sbjct: 353 GGGRGGW--GGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGY 410

Query: 61  GQDQG 65
           G   G
Sbjct: 411 GDPYG 415



 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 34/65 (52%), Positives = 35/65 (53%), Gaps = 14/65 (21%)

Query: 163 GEKGPPRGGGRGGRGGGRGG-------GGRGGGRGGGFRGGR-------GGGGGGFRGGR 208
           G  G   GG  GG GGGRGG       GGRGG  G G  GGR       GGGGGG  GG 
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426

Query: 209 GGGFR 213
           GGG+R
Sbjct: 427 GGGYR 431



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 31/66 (46%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNH----------FRGGGGGGGGGNFRGGGRGGFGRGGG 54
           GGG GG    GGGGG  RGG               RGG GG G G+  GGG GG G GGG
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426

Query: 55  RGGFNK 60
            GG+ +
Sbjct: 427 GGGYRR 432



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 18/28 (64%), Positives = 18/28 (64%)

Query: 30  RGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           R  GGGG GG   GGG GG G GGG GG
Sbjct: 328 RQEGGGGRGGWGGGGGGGGRGGGGGGGG 355


>gi|12056465 fibrillarin [Homo sapiens]
          Length = 321

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 40/58 (68%), Positives = 40/58 (68%), Gaps = 11/58 (18%)

Query: 168 PRGGGRGGRGG--------GRGGGGRGGGRGGGFRG-GRGGGGGGFRGGRGGGFRGRG 216
           PRGGG GGRGG        GRGG G G GRGGGFRG GRGGGGGG  GG GGG RG G
Sbjct: 7   PRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGG--GGGGGGGRGGG 62



 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 48/122 (39%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 6   GGRGGFN-------RGGGGGGFNRGGS-SNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           GGRGGF        RGG GGG  RGG      RGGGGGGGGG   G G GGF  GG RG 
Sbjct: 13  GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72

Query: 58  FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTD----ENKVPYFNAPVYLENKEQIGKV 113
              G+      + V++    H  E   +C+   D    +N VP     VY E +  I + 
Sbjct: 73  GRGGKRGNQSGKNVMVEPHRH--EGVFICRGKEDALVTKNLVP--GESVYGEKRVSISEG 128

Query: 114 DE 115
           D+
Sbjct: 129 DD 130



 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 42/74 (56%), Positives = 42/74 (56%), Gaps = 17/74 (22%)

Query: 157 FLPRPPGEKGPPRGG-----GRGGRGG-----GRGGG----GRGGGRGGGFRGGRGGGGG 202
           F PR  G  G  RGG     GRGGRGG     GRGGG    GRGGG GGG  GG G GGG
Sbjct: 5   FSPRGGGFGG--RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62

Query: 203 GFRGGRGGGFRGRG 216
           GF  G   G RGRG
Sbjct: 63  GFHSGGNRG-RGRG 75



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 32/52 (61%), Positives = 32/52 (61%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G  G  RG G G RG GRGGGG GGG GGG RGG G   GG RG   GG RG
Sbjct: 28  GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 34/58 (58%), Positives = 35/58 (60%), Gaps = 10/58 (17%)

Query: 4  RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
          RGGG GG  RGG G   +RGG     RGG GG GGG  RGGG  G GRGGG GG   G
Sbjct: 8  RGGGFGG--RGGFG---DRGG-----RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG 55



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 30/50 (60%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFR--GGRGGGGGGFRGGRGG 210
           G  G  RG GRGG GGG GGGG GG  GGGF   G RG G GG RG + G
Sbjct: 35  GRGGGFRGRGRGGGGGG-GGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 33/61 (54%), Positives = 36/61 (59%), Gaps = 13/61 (21%)

Query: 10 GFN-RGGGGGGFNRGGSSNHFRGGGGGGGG--------GNFRGGGRGGFGRGGGRGGFNK 60
          GF+ RGGG GG  RGG  +  RGG GG GG        G FRG GRGG G GGG GG  +
Sbjct: 4  GFSPRGGGFGG--RGGFGD--RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59

Query: 61 G 61
          G
Sbjct: 60 G 60



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 24/45 (53%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 157 FLPRPPGEKGPPRGGGRGGRGGG--RGGGGRGGGRGGGFRGGRGG 199
           F  R  G  G   GGG GGRGGG    GG RG GRGG  RG + G
Sbjct: 40  FRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK-RGNQSG 83


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 79/230 (34%), Positives = 93/230 (40%), Gaps = 48/230 (20%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP- 67
           G  NRG G GGF+RGG S   RGG GGG GG    G RGGF + GG        D GPP 
Sbjct: 240 GPDNRGRGRGGFDRGGMS---RGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPV 296

Query: 68  -----------------ERVVL--LGEFLHPCEDDIVCKCT---------TDENKVPYFN 99
                            + V L  L +F   C    + K T           E   P  +
Sbjct: 297 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 356

Query: 100 APVYLENKEQIGKVDEIFGQLRDFYFS-VKLSENMKASSFKKLQKFYIDPYKLLPLQRFL 158
           A V  E+        E F   +DF  S +K+S   K      ++         LP +   
Sbjct: 357 ATVSYEDPPTAKAAVEWFDG-KDFQGSKLKVSLARKKPPMNSMRGG-------LPPREGR 408

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGG-GGRGGGRGG----GFRGGRGGGGGG 203
             PP  +G P  GG GG GG  G  GGRGG RGG    G RG RG   GG
Sbjct: 409 GMPPPLRGGP--GGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 456



 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 39/62 (62%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 157 FLPRPPGEKGPPRG-GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG---GGF 212
           FLP P    G  RG GG GG  GGRGG    GG GG FRGGRGG  GGFRGGRG   GGF
Sbjct: 495 FLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGF 554

Query: 213 RG 214
            G
Sbjct: 555 GG 556



 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 80/262 (30%), Positives = 97/262 (37%), Gaps = 85/262 (32%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG---GGRGGFGRGGGRGG 57
           M   G   GGF+  G G   +  G  N  RG GG   GG  RG   GGRGG G  G RGG
Sbjct: 219 MGVYGQESGGFS--GPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGG 276

Query: 58  FNK---GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVD 114
           FNK     D+GP    + LG  + P ED                N+ +Y++       +D
Sbjct: 277 FNKPGGPMDEGPD---LDLGPPVDPDEDS--------------DNSAIYVQGLNDSVTLD 319

Query: 115 EIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE---------- 164
           +    L DF+         K     K+ K    P   + L +   +P G+          
Sbjct: 320 D----LADFF---------KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 366

Query: 165 ------------------------KGPPRGGGRGG----RGGG-----RGGGGRGGGRGG 191
                                   K PP    RGG     G G     RGG G  GG GG
Sbjct: 367 AKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGG 426

Query: 192 --GFRGGRGGGGGGF--RGGRG 209
             G  GGRGG  GGF  RG RG
Sbjct: 427 PMGRMGGRGGDRGGFPPRGPRG 448



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 37/62 (59%), Positives = 39/62 (62%), Gaps = 10/62 (16%)

Query: 159 PRPPGEKGPPRGGG-RGGRGG--GRGG------GGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           P P G++G    GG RGGRGG   RGG      GGRGG R GGFRGGRG   GGF GGR 
Sbjct: 501 PPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDR-GGFRGGRGMDRGGFGGGRR 559

Query: 210 GG 211
           GG
Sbjct: 560 GG 561



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 37/67 (55%), Positives = 38/67 (56%), Gaps = 10/67 (14%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG---GRGGFGRGGGRGGFNK 60
           RG G  G  RGG GG  +RGG    FRGG GG  GG FRGG    RGGFG GG RGG   
Sbjct: 507 RGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGRGMDRGGFG-GGRRGG--- 561

Query: 61  GQDQGPP 67
               GPP
Sbjct: 562 --PGGPP 566



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 34/59 (57%), Positives = 36/59 (61%), Gaps = 12/59 (20%)

Query: 164 EKGPPRGGGRGGRGGGRGG--GGRG---GGRGGGFRGGRGGGG-------GGFRGGRGG 210
           ++G P G  RGGRGG RGG  GGRG   GG GGG RGG GG         GG RGGRGG
Sbjct: 524 DRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 582



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 37/74 (50%), Positives = 39/74 (52%), Gaps = 15/74 (20%)

Query: 6   GGRGGF-NRGGGGGGFN--RGGSSNHFRGGGG---GGGGGNFRGGGRGG--------FGR 51
           GGRGG  +RGG GG F   RGG    FRGG G   GG GG  RGG  G          GR
Sbjct: 517 GGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGR 576

Query: 52  GGGRGGFNKGQDQG 65
            GGRGG  K  D+G
Sbjct: 577 RGGRGGPGK-MDKG 589



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/60 (50%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF--GRGGGRGGFNKGQDQGP 66
           GG    GG GG  RGG       GG GG     RGG RGGF  GRG  RGGF  G+  GP
Sbjct: 504 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 562



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 163 GEKGPPRGGGRGGRGGGRG--GGGRGGGRG----------GGFRGGRGGGG 201
           G +G  RGG RGGRG  RG  GGGR GG G          GG RGGRGG G
Sbjct: 534 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 584



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR--GGGRGGFGRGGGRGGFNKG 61
           RGG RGGF    GG G +RGG     RGG GG  G      GG RGG    GG G  +KG
Sbjct: 536 RGGDRGGFR---GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGG---RGGPGKMDKG 589

Query: 62  Q 62
           +
Sbjct: 590 E 590



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 31/67 (46%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 159 PRPPGEKGPPRGG--GRGGRGGGRGGGGRGGGRGGGFRGG--RGGGGGGFRGGRG----- 209
           P   G  G   GG  G G      G   RG GRGG  RGG  RGG GGG RGG G     
Sbjct: 216 PSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGG-RGGMGSAGER 274

Query: 210 GGFRGRG 216
           GGF   G
Sbjct: 275 GGFNKPG 281



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 163 GEKGPPRGGGRGGRGGGRGG---------GGRGGGRGGGFRGGRG 198
           G +G  RGG  GGR GG GG         GGR GGRGG  +  +G
Sbjct: 545 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKG 589



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 31/98 (31%)

Query: 1   MSFRGGGRGGF-------NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR----------- 42
           M  RGG RGGF       +RG   GG N    +  ++    G G  NF            
Sbjct: 431 MGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAP 490

Query: 43  -------------GGGRGGFGRGGGRGGFNKGQDQGPP 67
                        GG RG  G GG RGG     D+G P
Sbjct: 491 KPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP 528



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13  RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGR--GGGRGGFNKGQDQGP 66
           RGG GG    GG      GG GG  GG    G RG  G   GGG      G  Q P
Sbjct: 415 RGGPGGPGGPGGPMGRM-GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCP 469



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRGGG 45
           GG GG   GG GG   R G     RGG    G  G  GN  GGG
Sbjct: 416 GGPGG--PGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 457


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 79/230 (34%), Positives = 93/230 (40%), Gaps = 48/230 (20%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP- 67
           G  NRG G GGF+RGG S   RGG GGG GG    G RGGF + GG        D GPP 
Sbjct: 296 GPDNRGRGRGGFDRGGMS---RGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPV 352

Query: 68  -----------------ERVVL--LGEFLHPCEDDIVCKCT---------TDENKVPYFN 99
                            + V L  L +F   C    + K T           E   P  +
Sbjct: 353 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 412

Query: 100 APVYLENKEQIGKVDEIFGQLRDFYFS-VKLSENMKASSFKKLQKFYIDPYKLLPLQRFL 158
           A V  E+        E F   +DF  S +K+S   K      ++         LP +   
Sbjct: 413 ATVSYEDPPTAKAAVEWFDG-KDFQGSKLKVSLARKKPPMNSMRGG-------LPPREGR 464

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGG-GGRGGGRGG----GFRGGRGGGGGG 203
             PP  +G P  GG GG GG  G  GGRGG RGG    G RG RG   GG
Sbjct: 465 GMPPPLRGGP--GGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 512



 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 39/62 (62%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 157 FLPRPPGEKGPPRG-GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG---GGF 212
           FLP P    G  RG GG GG  GGRGG    GG GG FRGGRGG  GGFRGGRG   GGF
Sbjct: 551 FLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGF 610

Query: 213 RG 214
            G
Sbjct: 611 GG 612



 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 80/262 (30%), Positives = 97/262 (37%), Gaps = 85/262 (32%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG---GGRGGFGRGGGRGG 57
           M   G   GGF+  G G   +  G  N  RG GG   GG  RG   GGRGG G  G RGG
Sbjct: 275 MGVYGQESGGFS--GPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGG 332

Query: 58  FNK---GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVD 114
           FNK     D+GP    + LG  + P ED                N+ +Y++       +D
Sbjct: 333 FNKPGGPMDEGPD---LDLGPPVDPDEDS--------------DNSAIYVQGLNDSVTLD 375

Query: 115 EIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE---------- 164
           +    L DF+         K     K+ K    P   + L +   +P G+          
Sbjct: 376 D----LADFF---------KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 422

Query: 165 ------------------------KGPPRGGGRGG----RGGG-----RGGGGRGGGRGG 191
                                   K PP    RGG     G G     RGG G  GG GG
Sbjct: 423 AKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGG 482

Query: 192 --GFRGGRGGGGGGF--RGGRG 209
             G  GGRGG  GGF  RG RG
Sbjct: 483 PMGRMGGRGGDRGGFPPRGPRG 504



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 37/62 (59%), Positives = 39/62 (62%), Gaps = 10/62 (16%)

Query: 159 PRPPGEKGPPRGGG-RGGRGG--GRGG------GGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           P P G++G    GG RGGRGG   RGG      GGRGG R GGFRGGRG   GGF GGR 
Sbjct: 557 PPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDR-GGFRGGRGMDRGGFGGGRR 615

Query: 210 GG 211
           GG
Sbjct: 616 GG 617



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 37/67 (55%), Positives = 38/67 (56%), Gaps = 10/67 (14%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG---GRGGFGRGGGRGGFNK 60
           RG G  G  RGG GG  +RGG    FRGG GG  GG FRGG    RGGFG GG RGG   
Sbjct: 563 RGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGRGMDRGGFG-GGRRGG--- 617

Query: 61  GQDQGPP 67
               GPP
Sbjct: 618 --PGGPP 622



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 34/59 (57%), Positives = 36/59 (61%), Gaps = 12/59 (20%)

Query: 164 EKGPPRGGGRGGRGGGRGG--GGRG---GGRGGGFRGGRGGGG-------GGFRGGRGG 210
           ++G P G  RGGRGG RGG  GGRG   GG GGG RGG GG         GG RGGRGG
Sbjct: 580 DRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 638



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 37/74 (50%), Positives = 39/74 (52%), Gaps = 15/74 (20%)

Query: 6   GGRGGF-NRGGGGGGFN--RGGSSNHFRGGGG---GGGGGNFRGGGRGG--------FGR 51
           GGRGG  +RGG GG F   RGG    FRGG G   GG GG  RGG  G          GR
Sbjct: 573 GGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGR 632

Query: 52  GGGRGGFNKGQDQG 65
            GGRGG  K  D+G
Sbjct: 633 RGGRGGPGK-MDKG 645



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/60 (50%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF--GRGGGRGGFNKGQDQGP 66
           GG    GG GG  RGG       GG GG     RGG RGGF  GRG  RGGF  G+  GP
Sbjct: 560 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 618



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 163 GEKGPPRGGGRGGRGGGRG--GGGRGGGRG----------GGFRGGRGGGG 201
           G +G  RGG RGGRG  RG  GGGR GG G          GG RGGRGG G
Sbjct: 590 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 640



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR--GGGRGGFGRGGGRGGFNKG 61
           RGG RGGF    GG G +RGG     RGG GG  G      GG RGG    GG G  +KG
Sbjct: 592 RGGDRGGFR---GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGG---RGGPGKMDKG 645

Query: 62  Q 62
           +
Sbjct: 646 E 646



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 31/67 (46%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 159 PRPPGEKGPPRGG--GRGGRGGGRGGGGRGGGRGGGFRGG--RGGGGGGFRGGRG----- 209
           P   G  G   GG  G G      G   RG GRGG  RGG  RGG GGG RGG G     
Sbjct: 272 PSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGG-RGGMGSAGER 330

Query: 210 GGFRGRG 216
           GGF   G
Sbjct: 331 GGFNKPG 337



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 163 GEKGPPRGGGRGGRGGGRGG---------GGRGGGRGGGFRGGRG 198
           G +G  RGG  GGR GG GG         GGR GGRGG  +  +G
Sbjct: 601 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKG 645



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 31/98 (31%)

Query: 1   MSFRGGGRGGF-------NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR----------- 42
           M  RGG RGGF       +RG   GG N    +  ++    G G  NF            
Sbjct: 487 MGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAP 546

Query: 43  -------------GGGRGGFGRGGGRGGFNKGQDQGPP 67
                        GG RG  G GG RGG     D+G P
Sbjct: 547 KPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP 584



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13  RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGR--GGGRGGFNKGQDQGP 66
           RGG GG    GG      GG GG  GG    G RG  G   GGG      G  Q P
Sbjct: 471 RGGPGGPGGPGGPMGRM-GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCP 525



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRGGG 45
           GG GG   GG GG   R G     RGG    G  G  GN  GGG
Sbjct: 472 GGPGG--PGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 513


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 39/51 (76%), Positives = 40/51 (78%), Gaps = 7/51 (13%)

Query: 168 PRG-GGRGGRGGGRGG-GGRGGGRGG-GFRGGRGGGG----GGFRGGRGGG 211
           P+G GG GGRGGGRGG GGRGGGRGG G  GGRG GG    GGFRGGRGGG
Sbjct: 647 PKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGG 697



 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 38/62 (61%), Positives = 38/62 (61%), Gaps = 10/62 (16%)

Query: 7   GRGGFN-RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-GRGGGRGGFNKGQDQ 64
           G GGF  RGGG GGF  GG     RGGG GG GG F G GRGGF GRGG RGG   G D 
Sbjct: 649 GEGGFGGRGGGRGGF--GG-----RGGGRGGRGG-FGGRGRGGFGGRGGFRGGRGGGGDH 700

Query: 65  GP 66
            P
Sbjct: 701 KP 702



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 36/59 (61%), Positives = 37/59 (62%), Gaps = 11/59 (18%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           RGGGRGGF  GG GGG  RGG     RGG GG G G F  GGRGGF  G G GG +K Q
Sbjct: 656 RGGGRGGF--GGRGGG--RGG-----RGGFGGRGRGGF--GGRGGFRGGRGGGGDHKPQ 703



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 14/50 (28%)

Query: 30  RGGGGGGGGGNFRG---------GGRGGF-GRG----GGRGGFNKGQDQG 65
           +G GG GG G  RG         GGRGGF GRG    GGRGGF  G+  G
Sbjct: 648 KGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGG 697



 Score = 31.6 bits (70), Expect = 0.54
 Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 12/35 (34%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGG 37
           F G GRGGF  GG GG          FRGG GGGG
Sbjct: 676 FGGRGRGGF--GGRGG----------FRGGRGGGG 698


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 78/230 (33%), Positives = 92/230 (40%), Gaps = 49/230 (21%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP- 67
           G  NRG G GGF+RGG S   RGGG GG G     G RGGF + GG        D GPP 
Sbjct: 296 GPDNRGRGRGGFDRGGMSRGGRGGGRGGMG----AGERGGFNKPGGPMDEGPDLDLGPPV 351

Query: 68  -----------------ERVVL--LGEFLHPCEDDIVCKCT---------TDENKVPYFN 99
                            + V L  L +F   C    + K T           E   P  +
Sbjct: 352 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 411

Query: 100 APVYLENKEQIGKVDEIFGQLRDFYFS-VKLSENMKASSFKKLQKFYIDPYKLLPLQRFL 158
           A V  E+        E F   +DF  S +K+S   K      ++         LP +   
Sbjct: 412 ATVSYEDPPTAKAAVEWFDG-KDFQGSKLKVSLARKKPPMNSMRGG-------LPPREGR 463

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGG-GGRGGGRGG----GFRGGRGGGGGG 203
             PP  +G P  GG GG GG  G  GGRGG RGG    G RG RG   GG
Sbjct: 464 GMPPPLRGGP--GGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 511



 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 39/62 (62%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 157 FLPRPPGEKGPPRG-GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG---GGF 212
           FLP P    G  RG GG GG  GGRGG    GG GG FRGGRGG  GGFRGGRG   GGF
Sbjct: 550 FLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGF 609

Query: 213 RG 214
            G
Sbjct: 610 GG 611



 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 80/262 (30%), Positives = 97/262 (37%), Gaps = 86/262 (32%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG---GGRGGFGRGGGRGG 57
           M   G   GGF+  G G   +  G  N  RG GG   GG  RG   GGRGG G  G RGG
Sbjct: 275 MGVYGQESGGFS--GPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMG-AGERGG 331

Query: 58  FNK---GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVD 114
           FNK     D+GP    + LG  + P ED                N+ +Y++       +D
Sbjct: 332 FNKPGGPMDEGPD---LDLGPPVDPDEDS--------------DNSAIYVQGLNDSVTLD 374

Query: 115 EIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE---------- 164
           +    L DF+         K     K+ K    P   + L +   +P G+          
Sbjct: 375 D----LADFF---------KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 421

Query: 165 ------------------------KGPPRGGGRGG----RGGG-----RGGGGRGGGRGG 191
                                   K PP    RGG     G G     RGG G  GG GG
Sbjct: 422 AKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGG 481

Query: 192 --GFRGGRGGGGGGF--RGGRG 209
             G  GGRGG  GGF  RG RG
Sbjct: 482 PMGRMGGRGGDRGGFPPRGPRG 503



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 37/62 (59%), Positives = 39/62 (62%), Gaps = 10/62 (16%)

Query: 159 PRPPGEKGPPRGGG-RGGRGG--GRGG------GGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           P P G++G    GG RGGRGG   RGG      GGRGG R GGFRGGRG   GGF GGR 
Sbjct: 556 PPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDR-GGFRGGRGMDRGGFGGGRR 614

Query: 210 GG 211
           GG
Sbjct: 615 GG 616



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 37/66 (56%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG---GRGGFGRGGGRGGFNK 60
           RG G  G  RGG GG  +RGG    FRGG GG  GG FRGG    RGGFG GG RGG   
Sbjct: 562 RGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGRGMDRGGFG-GGRRGG--P 617

Query: 61  GQDQGP 66
           G   GP
Sbjct: 618 GGPPGP 623



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 34/59 (57%), Positives = 36/59 (61%), Gaps = 12/59 (20%)

Query: 164 EKGPPRGGGRGGRGGGRGG--GGRG---GGRGGGFRGGRGGGG-------GGFRGGRGG 210
           ++G P G  RGGRGG RGG  GGRG   GG GGG RGG GG         GG RGGRGG
Sbjct: 579 DRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 637



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 37/74 (50%), Positives = 39/74 (52%), Gaps = 15/74 (20%)

Query: 6   GGRGGF-NRGGGGGGFN--RGGSSNHFRGGGG---GGGGGNFRGGGRGG--------FGR 51
           GGRGG  +RGG GG F   RGG    FRGG G   GG GG  RGG  G          GR
Sbjct: 572 GGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGR 631

Query: 52  GGGRGGFNKGQDQG 65
            GGRGG  K  D+G
Sbjct: 632 RGGRGGPGK-MDKG 644



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/60 (50%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF--GRGGGRGGFNKGQDQGP 66
           GG    GG GG  RGG       GG GG     RGG RGGF  GRG  RGGF  G+  GP
Sbjct: 559 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 617



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 163 GEKGPPRGGGRGGRGGGRG--GGGRGGGRG----------GGFRGGRGGGG 201
           G +G  RGG RGGRG  RG  GGGR GG G          GG RGGRGG G
Sbjct: 589 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 639



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/55 (50%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGG-GRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  GP  G  R   G    G GRGG  RGG  RGGRGGG GG   G  GGF   G
Sbjct: 284 GFSGP--GENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPG 336



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR--GGGRGGFGRGGGRGGFNKG 61
           RGG RGGF    GG G +RGG     RGG GG  G      GG RGG    GG G  +KG
Sbjct: 591 RGGDRGGFR---GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGG---RGGPGKMDKG 644

Query: 62  Q 62
           +
Sbjct: 645 E 645



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 25/54 (46%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 159 PRPPGEKGPPRGG--GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
           P   G  G   GG  G G      G   RG GRGG  RGG   GG G  GGRGG
Sbjct: 272 PSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRG--GGRGG 323



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 163 GEKGPPRGGGRGGRGGGRGG---------GGRGGGRGGGFRGGRG 198
           G +G  RGG  GGR GG GG         GGR GGRGG  +  +G
Sbjct: 600 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKG 644



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 31/98 (31%)

Query: 1   MSFRGGGRGGF-------NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR----------- 42
           M  RGG RGGF       +RG   GG N    +  ++    G G  NF            
Sbjct: 486 MGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAP 545

Query: 43  -------------GGGRGGFGRGGGRGGFNKGQDQGPP 67
                        GG RG  G GG RGG     D+G P
Sbjct: 546 KPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP 583



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13  RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGR--GGGRGGFNKGQDQGP 66
           RGG GG    GG      GG GG  GG    G RG  G   GGG      G  Q P
Sbjct: 470 RGGPGGPGGPGGPMGRM-GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCP 524



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRGGG 45
           GG GG   GG GG   R G     RGG    G  G  GN  GGG
Sbjct: 471 GGPGG--PGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 512


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 78/230 (33%), Positives = 92/230 (40%), Gaps = 49/230 (21%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPP- 67
           G  NRG G GGF+RGG S   RGGG GG G     G RGGF + GG        D GPP 
Sbjct: 302 GPDNRGRGRGGFDRGGMSRGGRGGGRGGMG----AGERGGFNKPGGPMDEGPDLDLGPPV 357

Query: 68  -----------------ERVVL--LGEFLHPCEDDIVCKCT---------TDENKVPYFN 99
                            + V L  L +F   C    + K T           E   P  +
Sbjct: 358 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 417

Query: 100 APVYLENKEQIGKVDEIFGQLRDFYFS-VKLSENMKASSFKKLQKFYIDPYKLLPLQRFL 158
           A V  E+        E F   +DF  S +K+S   K      ++         LP +   
Sbjct: 418 ATVSYEDPPTAKAAVEWFDG-KDFQGSKLKVSLARKKPPMNSMRGG-------LPPREGR 469

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGG-GGRGGGRGG----GFRGGRGGGGGG 203
             PP  +G P  GG GG GG  G  GGRGG RGG    G RG RG   GG
Sbjct: 470 GMPPPLRGGP--GGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 517



 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 39/62 (62%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 157 FLPRPPGEKGPPRG-GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG---GGF 212
           FLP P    G  RG GG GG  GGRGG    GG GG FRGGRGG  GGFRGGRG   GGF
Sbjct: 556 FLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGF 615

Query: 213 RG 214
            G
Sbjct: 616 GG 617



 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 80/262 (30%), Positives = 97/262 (37%), Gaps = 86/262 (32%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG---GGRGGFGRGGGRGG 57
           M   G   GGF+  G G   +  G  N  RG GG   GG  RG   GGRGG G  G RGG
Sbjct: 281 MGVYGQESGGFS--GPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMG-AGERGG 337

Query: 58  FNK---GQDQGPPERVVLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVD 114
           FNK     D+GP    + LG  + P ED                N+ +Y++       +D
Sbjct: 338 FNKPGGPMDEGPD---LDLGPPVDPDEDS--------------DNSAIYVQGLNDSVTLD 380

Query: 115 EIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGE---------- 164
           +    L DF+         K     K+ K    P   + L +   +P G+          
Sbjct: 381 D----LADFF---------KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPT 427

Query: 165 ------------------------KGPPRGGGRGG----RGGG-----RGGGGRGGGRGG 191
                                   K PP    RGG     G G     RGG G  GG GG
Sbjct: 428 AKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGG 487

Query: 192 --GFRGGRGGGGGGF--RGGRG 209
             G  GGRGG  GGF  RG RG
Sbjct: 488 PMGRMGGRGGDRGGFPPRGPRG 509



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 37/62 (59%), Positives = 39/62 (62%), Gaps = 10/62 (16%)

Query: 159 PRPPGEKGPPRGGG-RGGRGG--GRGG------GGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           P P G++G    GG RGGRGG   RGG      GGRGG R GGFRGGRG   GGF GGR 
Sbjct: 562 PPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDR-GGFRGGRGMDRGGFGGGRR 620

Query: 210 GG 211
           GG
Sbjct: 621 GG 622



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 37/66 (56%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG---GRGGFGRGGGRGGFNK 60
           RG G  G  RGG GG  +RGG    FRGG GG  GG FRGG    RGGFG GG RGG   
Sbjct: 568 RGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGG-FRGGRGMDRGGFG-GGRRGG--P 623

Query: 61  GQDQGP 66
           G   GP
Sbjct: 624 GGPPGP 629



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 34/59 (57%), Positives = 36/59 (61%), Gaps = 12/59 (20%)

Query: 164 EKGPPRGGGRGGRGGGRGG--GGRG---GGRGGGFRGGRGGGG-------GGFRGGRGG 210
           ++G P G  RGGRGG RGG  GGRG   GG GGG RGG GG         GG RGGRGG
Sbjct: 585 DRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 643



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 37/74 (50%), Positives = 39/74 (52%), Gaps = 15/74 (20%)

Query: 6   GGRGGF-NRGGGGGGFN--RGGSSNHFRGGGG---GGGGGNFRGGGRGG--------FGR 51
           GGRGG  +RGG GG F   RGG    FRGG G   GG GG  RGG  G          GR
Sbjct: 578 GGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGR 637

Query: 52  GGGRGGFNKGQDQG 65
            GGRGG  K  D+G
Sbjct: 638 RGGRGGPGK-MDKG 650



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/60 (50%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 9   GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF--GRGGGRGGFNKGQDQGP 66
           GG    GG GG  RGG       GG GG     RGG RGGF  GRG  RGGF  G+  GP
Sbjct: 565 GGDRGRGGPGGM-RGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGP 623



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 163 GEKGPPRGGGRGGRGGGRG--GGGRGGGRG----------GGFRGGRGGGG 201
           G +G  RGG RGGRG  RG  GGGR GG G          GG RGGRGG G
Sbjct: 595 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPG 645



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/55 (50%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGG-GRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  GP  G  R   G    G GRGG  RGG  RGGRGGG GG   G  GGF   G
Sbjct: 290 GFSGP--GENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGFNKPG 342



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR--GGGRGGFGRGGGRGGFNKG 61
           RGG RGGF    GG G +RGG     RGG GG  G      GG RGG    GG G  +KG
Sbjct: 597 RGGDRGGFR---GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGG---RGGPGKMDKG 650

Query: 62  Q 62
           +
Sbjct: 651 E 651



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 25/54 (46%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 159 PRPPGEKGPPRGG--GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
           P   G  G   GG  G G      G   RG GRGG  RGG   GG G  GGRGG
Sbjct: 278 PSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRG--GGRGG 329



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 163 GEKGPPRGGGRGGRGGGRGG---------GGRGGGRGGGFRGGRG 198
           G +G  RGG  GGR GG GG         GGR GGRGG  +  +G
Sbjct: 606 GGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKG 650



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 31/98 (31%)

Query: 1   MSFRGGGRGGF-------NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR----------- 42
           M  RGG RGGF       +RG   GG N    +  ++    G G  NF            
Sbjct: 492 MGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAP 551

Query: 43  -------------GGGRGGFGRGGGRGGFNKGQDQGPP 67
                        GG RG  G GG RGG     D+G P
Sbjct: 552 KPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP 589



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13  RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGR--GGGRGGFNKGQDQGP 66
           RGG GG    GG      GG GG  GG    G RG  G   GGG      G  Q P
Sbjct: 476 RGGPGGPGGPGGPMGRM-GGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCP 530



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 20/44 (45%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRGGG 45
           GG GG   GG GG   R G     RGG    G  G  GN  GGG
Sbjct: 477 GGPGG--PGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 518


>gi|119395750 keratin 1 [Homo sapiens]
          Length = 644

 Score = 64.3 bits (155), Expect = 8e-11
 Identities = 37/62 (59%), Positives = 37/62 (59%), Gaps = 10/62 (16%)

Query: 4   RGGGRG-GFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG---GRGGFN 59
           RGGGRG GF  G GGGGF  GG       GGGG GGG   GGG GGFG GG   G GGF 
Sbjct: 82  RGGGRGSGFGGGYGGGGFGGGGF------GGGGFGGGGIGGGGFGGFGSGGGGFGGGGFG 135

Query: 60  KG 61
            G
Sbjct: 136 GG 137



 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 31/64 (48%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 5   GGGRGGFNRGGGGGG---FNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           G G G +  GGGGGG   +  G SS  +RGG GGGGGG+  G G GG   GG  GG  +G
Sbjct: 560 GSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGG--RG 617

Query: 62  QDQG 65
              G
Sbjct: 618 SSSG 621



 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 29/53 (54%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRG----GGRGGGFRGGRGGGGGGFRGGRGGG 211
           G  G   G G G  G G GGGG G    G   GG+RGG GGGGGG  GGRG G
Sbjct: 553 GSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGRGSG 605



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 35/52 (67%), Positives = 35/52 (67%), Gaps = 4/52 (7%)

Query: 169 RGGGRG-GRGGGRGGGGRGGGR--GGGFRGGR-GGGGGGFRGGRGGGFRGRG 216
           RGGGRG G GGG GGGG GGG   GGGF GG  GGGG G  G  GGGF G G
Sbjct: 82  RGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGG 133



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 15/72 (20%)

Query: 9   GGFNRGGGGGGFNRGGSS------NHFRGGGGGGG------GGNFRGGGRGGFGRGGGRG 56
           GG +RGGGGGG+  GGSS      ++  GGGGGGG      GG+  G G G +G GGG G
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGG 573

Query: 57  G---FNKGQDQG 65
           G   +  G   G
Sbjct: 574 GHGSYGSGSSSG 585



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 33/61 (54%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGGRGGRG--------GGRGGGGRGGGRGGGFRGGRGG-GGGGFRGGRGGGFR 213
           G +G   GGG GG G        GG GGGG GGG  GGF  G GG GGGGF GG  GG  
Sbjct: 84  GGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGGGY 143

Query: 214 G 214
           G
Sbjct: 144 G 144



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 31/54 (57%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRG 56
           + GGG GG   G GGGGF  GG      GG G GGGG F GGG GG G GGG G
Sbjct: 94  YGGGGFGG--GGFGGGGFGGGGIGGGGFGGFGSGGGG-FGGGGFGGGGYGGGYG 144



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 29/49 (59%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG--GRGGGFRGRG 216
           GG RGG GGG G GG   G GGG  G  GGGGGG RG  G GG   G G
Sbjct: 515 GGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGG-RGSYGSGGSSYGSG 562



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 33/75 (44%), Positives = 37/75 (49%), Gaps = 14/75 (18%)

Query: 5   GGGRGGFNRGGGGGG----FNRGGSSNHFRGG----GGGGGG------GNFRGGGRGGFG 50
           G G G +  GGGGGG    +  GGSS    GG    GGGGGG      G+  GG RGG G
Sbjct: 533 GSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSG 592

Query: 51  RGGGRGGFNKGQDQG 65
            GGG     +G   G
Sbjct: 593 GGGGGSSGGRGSGGG 607



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 33/72 (45%), Positives = 33/72 (45%), Gaps = 25/72 (34%)

Query: 170 GGGR----GGRGGGRGGGG---------------------RGGGRGGGFRGGRGGGGGGF 204
           GGGR    GG GG  G GG                     RGGGRG GF GG GGGG G 
Sbjct: 42  GGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGG 101

Query: 205 RGGRGGGFRGRG 216
            G  GGGF G G
Sbjct: 102 GGFGGGGFGGGG 113



 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 28/55 (50%), Positives = 29/55 (52%), Gaps = 10/55 (18%)

Query: 170 GGGRGGRGG--------GRGGGGRGGGRGGGFRG--GRGGGGGGFRGGRGGGFRG 214
           GGG GGRG         G GGG  G G GGG  G  G G   GG+RGG GGG  G
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGG 597



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 37/86 (43%), Positives = 39/86 (45%), Gaps = 29/86 (33%)

Query: 5   GGGRGGFNRGGGGGG-------------FNRGGS-------------SNHFRG--GGGGG 36
           GGG G F+  GGGGG              N GGS              + F G  GGGG 
Sbjct: 40  GGGGGRFSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGF 99

Query: 37  GGGNFRGGGRGGFG-RGGGRGGFNKG 61
           GGG F GGG GG G  GGG GGF  G
Sbjct: 100 GGGGFGGGGFGGGGIGGGGFGGFGSG 125



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 27/51 (52%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G   GG RGG GG  GGGG  GGRG G  GG  GG  G RG   GG +  G
Sbjct: 581 GSSSGGYRGGSGG--GGGGSSGGRGSG--GGSSGGSIGGRGSSSGGVKSSG 627



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 24/44 (54%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG 209
           G  RGG  GG GG  GG G GGG  GG  GGRG   GG +   G
Sbjct: 585 GGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGG 628



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 35/83 (42%), Positives = 37/83 (44%), Gaps = 26/83 (31%)

Query: 5   GGGRGGFNRGGGGGG---FNRGGSSN-----------------HFRGGG---GGGGGGNF 41
           GGG G F  GGG G     N GGS +                  + GGG   GG GGG F
Sbjct: 50  GGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGF 109

Query: 42  RGGGRGGFGRGG---GRGGFNKG 61
            GGG GG G GG   G GGF  G
Sbjct: 110 GGGGIGGGGFGGFGSGGGGFGGG 132



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNF--RGGGRGGFGRGGG 54
           S+  G   G  RGG GGG   GG S+  RG GGG  GG+   RG   GG    GG
Sbjct: 577 SYGSGSSSGGYRGGSGGG---GGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGG 628



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 2  SFRGGGR--GGFNRGGGGG-GFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRG 56
          S R G R  GGF+ G  G   + R  +S+  R  GGGGG  +  GGG G FG GGG G
Sbjct: 6  SSRSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFG 63



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 29/54 (53%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 3   FRGGGRGGFNRGGGG-GGFNRGGSSNHFRGGGGGGG-GGNFRGGGRGGFGRGGG 54
           F GGG GG   GGGG GGF  GG      GG GGGG GG   GGG G     GG
Sbjct: 104 FGGGGFGGGGIGGGGFGGFGSGG------GGFGGGGFGGGGYGGGYGPVCPPGG 151



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 20/35 (57%), Positives = 20/35 (57%)

Query: 177 GGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           GGG  GGG GG   GG   G GGG  G  GG GGG
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGG 548



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 41/102 (40%)

Query: 1   MSFRGGGRGGFNRGGGGGGFNRG----------GSSNHFRGGGG-----GGGGGNF---- 41
           MS +   R G+  GGG    + G           S+    GGGG     GGGGG+F    
Sbjct: 1   MSRQFSSRSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGG 60

Query: 42  ---------------------RGGGRG-GFGRGGGRGGFNKG 61
                                RGGGRG GFG G G GGF  G
Sbjct: 61  GFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGG 102



 Score = 34.7 bits (78), Expect = 0.064
 Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 15/60 (25%)

Query: 169 RGGGRGGRGGGRGGGG-------------RGGGRGGGFRGGRGGGGGGFRGGRGGGFRGR 215
           R G R G G   G  G             R  G GGG     GGGGG F  G GGGF  R
Sbjct: 8   RSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSF--GAGGGFGSR 65



 Score = 32.3 bits (72), Expect = 0.32
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 25  SSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
           S++H    GGG  GG   G G GG   G G G +  G   G
Sbjct: 506 STSHTTISGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGG 546



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

Query: 176 RGGGRGGGGRGGGRGGGFRGGR----------GGGGGGFRG-GRGGGFRGRG 216
           R G R GGG   G  G     R          GGGGG F   G GGG  G G
Sbjct: 8   RSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAG 59



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFR 42
           GG  GG   GGG  G + GG  +   G    GG  + +
Sbjct: 596 GGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGGSSSVK 633


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 60.8 bits (146), Expect = 8e-10
 Identities = 33/51 (64%), Positives = 33/51 (64%), Gaps = 5/51 (9%)

Query: 169 RGGGRG---GRGGGRGGGGRGGGRGGGF--RGGRGGGGGGFRGGRGGGFRG 214
           RGGG G   GRGG  GGGG   GRGG F  RGG GGGGGG RG  GGG  G
Sbjct: 216 RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGG 266



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 38/73 (52%), Positives = 41/73 (56%), Gaps = 9/73 (12%)

Query: 4   RGGGRGGF-----NRGGGGGGFNRGGSSNHFRGGGGGGGGGN--FRGGGRGGFGRGGGRG 56
           RGGG G F     N GGGGG F RGG+    RGG GGGGGG+    GGG GG+   GG G
Sbjct: 216 RGGGSGNFMGRGGNFGGGGGNFGRGGNFGG-RGGYGGGGGGSRGSYGGGDGGYNGFGGDG 274

Query: 57  GFNKGQDQGPPER 69
           G N G   G   R
Sbjct: 275 G-NYGGGPGYSSR 286



 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG GG+N  GG GG   GG     RGG GGGG G   G   GG+G GGG  G+N+G + 
Sbjct: 261 GGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPG--YGNQGGGYGGGGGYDGYNEGGNF 318

Query: 65  G 65
           G
Sbjct: 319 G 319



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 27/47 (57%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFR--GGRGGGFRG 214
           GGG  GRGG  GG G  GG GGG RG  GGG GG+   GG GG + G
Sbjct: 233 GGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGG 279



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 32/62 (51%), Positives = 35/62 (56%), Gaps = 9/62 (14%)

Query: 163 GEKGPPRGGGRGGRGGGRGG----GGRGGGRGGG----FRGGRGGGGGGFRGGRGGGFRG 214
           G  G   GG RG  GGG GG    GG GG  GGG     RGG GGGG G+ G +GGG+ G
Sbjct: 247 GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGY-GNQGGGYGG 305

Query: 215 RG 216
            G
Sbjct: 306 GG 307



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 30/55 (54%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 10  GFNRGGGGGGFNRGGSSNHFRGGGGG-GGGGNFRGGGRGGFGRGGG--RGGFNKG 61
           G  RG GGG  N  G   +F GGGG  G GGNF  GGRGG+G GGG  RG +  G
Sbjct: 211 GSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNF--GGRGGYGGGGGGSRGSYGGG 263



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 30/53 (56%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 169 RGGGRGGRGGGRG--GGGRGGGRGGGFRGGRGGGGGGF--RGGRGGGFRGRGH 217
           RGG  GG GG RG  GGG GG  G G  GG  GGG G+  RGG GGG  G G+
Sbjct: 246 RGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN 298



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 29/85 (34%)

Query: 3   FRGGGRGGFNRGGG---GGGFNRGGSSNHFRGGGGGGGG-----GNFRG----------- 43
           + GGG G  N+GGG   GGG++      +F GG  GGGG     GN+ G           
Sbjct: 289 YGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKG 348

Query: 44  ---GGR-------GGFGRGGGRGGF 58
              GGR       GG+G GGG GG+
Sbjct: 349 GSFGGRSSGSPYGGGYGSGGGSGGY 373



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 5   GGGRGGFNRGG-GGGGFNRGGSSNHFRGGGGGGG---GGNFRGGGRGGFGRGGGRGGFNK 60
           GGG G  +RGG GGGG   G     + GGGG  G   GGNF GG  GG G     G ++ 
Sbjct: 278 GGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYS- 336

Query: 61  GQDQ 64
           GQ Q
Sbjct: 337 GQQQ 340



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 170 GGGRGGRGGGRG----GGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
           GG  G  GGG G    GG  GGG G G +GG  GGGGG+ G   GG  G G+
Sbjct: 271 GGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/46 (54%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 22  RGGSSNHFRGGGGG---GGGGNFRGGGRGGFGRG---GGRGGFNKG 61
           +   S   RGGG G   G GGNF GGG G FGRG   GGRGG+  G
Sbjct: 208 QSAGSQRGRGGGSGNFMGRGGNF-GGGGGNFGRGGNFGGRGGYGGG 252



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 23/69 (33%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNH----------------FRGGGGGG-------GGGNF 41
           GGG  G+N GG  GG N GG  N+                 +GG  GG       GGG  
Sbjct: 306 GGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYG 365

Query: 42  RGGGRGGFG 50
            GGG GG+G
Sbjct: 366 SGGGSGGYG 374



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 27/55 (49%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 163 GEKGPPRGGGRG-GRGGGRGGGGRG-GGRGGGFRGGRG----GGGGGFRGGRGGG 211
           G  G   GGG G    GG GGGG G G +GGG+ GG G      GG F GG  GG
Sbjct: 271 GGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGG 325



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRG-GRGGGGGGFRGGRGGGFRGRGH 217
           G  G    GG GG G G G  G G G GGG+ G   GG  GG   G GG +   G+
Sbjct: 279 GGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGN 334



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/34 (64%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 184 GRGGGRGGGF-RGGRGGGGGGFRGGRGGGFRGRG 216
           GRGGG G    RGG  GGGGG   GRGG F GRG
Sbjct: 215 GRGGGSGNFMGRGGNFGGGGG-NFGRGGNFGGRG 247



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 29/81 (35%)

Query: 163 GEKGPPRGGGRG----GRGGGRGGGGRGGG--------------------RGGGFRGGRG 198
           G +G   GGG G      GG  GGG  GGG                    +GG F GGR 
Sbjct: 297 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSF-GGRS 355

Query: 199 GG---GGGF-RGGRGGGFRGR 215
            G   GGG+  GG  GG+  R
Sbjct: 356 SGSPYGGGYGSGGGSGGYGSR 376



 Score = 33.1 bits (74), Expect = 0.19
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 33  GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
           G GGG GNF G G G FG GGG   F +G + G
Sbjct: 215 GRGGGSGNFMGRG-GNFGGGGGN--FGRGGNFG 244



 Score = 31.6 bits (70), Expect = 0.54
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 9/43 (20%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGR 208
           GP +GG  GGR  G          GGG+  G GGG GG+   R
Sbjct: 344 GPMKGGSFGGRSSG-------SPYGGGY--GSGGGSGGYGSRR 377


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 35/61 (57%), Positives = 37/61 (60%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGGRGG--RGGGRGG---GGRGGGRGGGFRGGRGGGGGGFRGG----RGGGFR 213
           G  G   GGG GG   GGG GG   GG GG RGGG+ G RGGG GG RGG    RGGG+ 
Sbjct: 433 GYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYG 492

Query: 214 G 214
           G
Sbjct: 493 G 493



 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 34/60 (56%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRG---GGFRGGRGGGGGGFRGGRGGGFRGRG 216
           R  G  G  RGGG GG  GG  GG RGGG G   GG+ G RGGG GG RGG GG   G G
Sbjct: 447 RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG 506



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 35/57 (61%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 163 GEKGPPRGGGRGG-RGGGRGG--GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G  RGGG GG RGGG GG  GG GG RGGG+ G RGG GG  RGG GG   G G
Sbjct: 458 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD-RGGYGGDRGGYG 513



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 20/69 (28%)

Query: 169 RGGGRGGRGGGRGGGGRGGGR--------------------GGGFRGGRGGGGGGFRGGR 208
           RGG RGG GG R GGG GG R                    GGG+ G RGGG GG RGG 
Sbjct: 408 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 467

Query: 209 GGGFRGRGH 217
            GG RG G+
Sbjct: 468 YGGDRGGGY 476



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 33/59 (55%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG--RGGGRGGFNKG 61
           GGG GG +R GGG G +RGG     RGGG GG  G   GG RGG+G  RGGG GG   G
Sbjct: 440 GGGYGG-DRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 497



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 34/58 (58%), Positives = 37/58 (63%), Gaps = 5/58 (8%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRG--GGFRGGRGGGGGGFRGGRG--GGFRGRG 216
           G++G   GG RGG GG R GGG GG RG  GG RGG GG  GG+ G RG  GG R RG
Sbjct: 470 GDRGGGYGGDRGGYGGDR-GGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG 526



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/65 (50%), Positives = 37/65 (56%), Gaps = 13/65 (20%)

Query: 163 GEKGPPRGGGRGGR----GGGRGGGGRGGGR--GGGFRGGRGGG-------GGGFRGGRG 209
           GE+G    GGRGG     GG R GGG GG R  GGG+ G R GG       GGG+ G RG
Sbjct: 398 GERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRG 457

Query: 210 GGFRG 214
           GG+ G
Sbjct: 458 GGYGG 462



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/58 (56%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 163 GEKGPPRGGGRGG-RGGGRGG---GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G   GGG GG RGGG GG   GG GG RGGG+ G RGG GG   GG GG   G G
Sbjct: 442 GYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYG 499



 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 31/56 (55%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGR 215
           R  G  G  RGGG  G GG R GG  G   GGG+ G RGGG GG RGG GG   GR
Sbjct: 523 RSRGGYGGDRGGG-SGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGR 577



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 10/67 (14%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-----GRGGGRGGF 58
           RGGG GG +RGGG GG +RGG     RGG GG  GG + GG RGG+     G GG RGG+
Sbjct: 456 RGGGYGG-DRGGGYGG-DRGGGYGGDRGGYGGDRGGGY-GGDRGGYGGDRGGYGGDRGGY 512

Query: 59  NKGQDQG 65
             G D+G
Sbjct: 513 --GGDRG 517



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 34/59 (57%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 163 GEKGPPRGG-----GRGGRGGGRGGG-GRGGGRGGGFRGGRGGGG-GGFRGGRGGGFRG 214
           G  G  RGG      RGG GG RGGG G GG R GG+ G R GGG GG RGG  GG RG
Sbjct: 510 GGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG 568



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 32/61 (52%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG  G   GGG GG   GG     RGGG GG  G   GG RGG G GG RGG+  G D+
Sbjct: 431 GGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG-GYGGDRGGY--GGDR 487

Query: 65  G 65
           G
Sbjct: 488 G 488



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 12/64 (18%)

Query: 163 GEKGPPRGGGRGGRGGGRGG-----GGRGGGRGG-------GFRGGRGGGGGGFRGGRGG 210
           G++G   GG RGG GG RGG     GG GG RGG       G  GG  GGG G+ G R G
Sbjct: 485 GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 544

Query: 211 GFRG 214
           G+ G
Sbjct: 545 GYGG 548



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG GG +RGGG GG +RGG     RGGG GG  G + GG RGG G GG RGG+  G D+
Sbjct: 449 GGGYGG-DRGGGYGG-DRGGGYGGDRGGGYGGDRGGY-GGDRGG-GYGGDRGGY--GGDR 502

Query: 65  G 65
           G
Sbjct: 503 G 503



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 9/67 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-----GRGGGRGGF 58
           RGGG GG +RGGG GG +RGG     RGGG GG  G + GG RGG+     G GG RGG+
Sbjct: 464 RGGGYGG-DRGGGYGG-DRGGYGGD-RGGGYGGDRGGY-GGDRGGYGGDRGGYGGDRGGY 519

Query: 59  NKGQDQG 65
              + +G
Sbjct: 520 GGDRSRG 526



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/62 (54%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 163 GEKGPPRGGGRGGRGGGRGG--GGRGGGRG--GGFRGGRGGGGGGFRGGRG----GGFRG 214
           G  G  RGG  G RGGG GG  GG GG RG  GG RGG GG  GG+ G R     GG RG
Sbjct: 474 GGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRG 533

Query: 215 RG 216
            G
Sbjct: 534 GG 535



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 30/59 (50%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 159 PRPPGEK---GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           PRP   +   G  RG G GG  G RG GGRGG R GG+ G R GGG G     GGG+ G
Sbjct: 379 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDR-GGYGGDRSGGGYGGDRSSGGGYSG 436



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 14/75 (18%)

Query: 4   RGGGRGGF--NRGGGGGGFNR--GGSSNHFRGGGG------GGGGGNFRGGGRGGF---G 50
           RGG RGG+  +R GGG G +R  GG  +  R GGG      GGG G  RGGG GG    G
Sbjct: 408 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 467

Query: 51  RGGGRGGFNKGQDQG 65
            GG RGG   G D+G
Sbjct: 468 YGGDRGG-GYGGDRG 481



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 5   GGGRGGFNRGGGGGGFNRGG-SSNHFRGG-GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GG RGG+    GG G +RGG   +  RGG GG  GGG+  GG R G G GG R G   G 
Sbjct: 499 GGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG-GYGGDRSGGGYGG 557

Query: 63  DQG 65
           D+G
Sbjct: 558 DRG 560



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 5   GGGRGGF--NRGGGGGGFNRGGSSNHFRGGGGGGG------GGNFRGGGRGGFGRGGGRG 56
           GG RGG+  +RGG GG  +RGG      GG G GG      GG+  GGG GG  RGGG G
Sbjct: 506 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGG-DRGGGYG 564

Query: 57  GFNKG 61
           G   G
Sbjct: 565 GDRGG 569



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 8/63 (12%)

Query: 5   GGGRGGF--NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GG RGG+  +RGGG GG +RGG     RGG GG  GG   GG RGG+G    RGG+  G 
Sbjct: 477 GGDRGGYGGDRGGGYGG-DRGGYGGD-RGGYGGDRGG--YGGDRGGYGGDRSRGGY--GG 530

Query: 63  DQG 65
           D+G
Sbjct: 531 DRG 533



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 32/66 (48%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG----GGGGNFRGGGRG-GFGRGGGRGGFN 59
           GG RGG+    GG G +RGG     RGG GG    GG G  RGGG G G  R GG GG  
Sbjct: 492 GGDRGGYGGDRGGYGGDRGGYGGD-RGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR 550

Query: 60  KGQDQG 65
            G   G
Sbjct: 551 SGGGYG 556



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 35/76 (46%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 3   FRGGGRGGFN--RGGGGGGFNRGGSSNHFRGGG-------GGGGGGNFRGGG----RGGF 49
           FRG G GG    RG GG G +RGG      GGG       GGG  G+  GGG    R G 
Sbjct: 391 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGG 450

Query: 50  GRGGGRGGFNKGQDQG 65
           G GG RGG   G D+G
Sbjct: 451 GYGGDRGG-GYGGDRG 465



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGG--GGNFRGGGRGGF-GRGGGRGGFNKGQ 62
           GG GG   GG G G +R G     R GGG GG  GG + GG RGG+ G+ GGR  +   Q
Sbjct: 526 GGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGY-GGDRGGYGGKMGGRNDYRNDQ 584

Query: 63  DQGP 66
              P
Sbjct: 585 RNRP 588



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 27/58 (46%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           RGGG GG   G GG     GG    + G  GG GG   RGG  G  G G G GG   G
Sbjct: 487 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 544



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 77/278 (27%), Positives = 94/278 (33%), Gaps = 90/278 (32%)

Query: 9   GGFNRGGGG---GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQD-- 63
           G  NRG GG   GG  RGG     RG   G  GG+     RGGF   GG   +    D  
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGD-----RGGFKNFGGHRDYGPRTDAD 222

Query: 64  -------------QGPPERVVL--LGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKE 108
                        QG  E V    +GEF       I    T  +   P  N     +  +
Sbjct: 223 SESDNSDNNTIFVQGLGEGVSTDQVGEFFK----QIGIIKTNKKTGKPMINLYTDKDTGK 278

Query: 109 QIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPP 168
             G+    F        ++   +          ++F+ +  K+    R   RP   +G  
Sbjct: 279 PKGEATVSFDDPPSAKAAIDWFDG---------KEFHGNIIKVSFATR---RPEFMRGGG 326

Query: 169 RGGGRGGRGGGRGGG---GRGG-------------------------------------- 187
            GGGR GRGG RG G   GRGG                                      
Sbjct: 327 SGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRP 386

Query: 188 ------GRG-GGFRGGRG-GGGGGFRGGRGGGFRGRGH 217
                 GRG GG RG RG GG GG RGG GG   G G+
Sbjct: 387 SGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGY 424



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 27/54 (50%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 164 EKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG-GGFRGRG 216
           E  P      GG   GRG GG  G RG G RGG  GG GG R G G GG R  G
Sbjct: 378 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSG 431



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 34/100 (34%), Positives = 37/100 (37%), Gaps = 38/100 (38%)

Query: 4   RGGGRGGFNRGGGG----GGFN-RGGSS--------------------------NHFRGG 32
           RGGG GG  RG GG    GGF  RGG                            N  R  
Sbjct: 323 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 382

Query: 33  GGGGGGGNFRGGGRGGF-------GRGGGRGGFNKGQDQG 65
                GG+FRG G GG        GRGG RGG+   +  G
Sbjct: 383 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGG 422



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 57/223 (25%), Positives = 79/223 (35%), Gaps = 67/223 (30%)

Query: 21  NRGGSSNHFRGG--GGGGGGGNFRGGGRGGF--GRGGGRGGFNK---GQDQGPPERVVLL 73
           +R G  N   GG  GGG G G +   GRG      GG RGGF      +D GP       
Sbjct: 165 SRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGP------- 217

Query: 74  GEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENM 133
                        +   D       N  ++++   +    D    Q+ +F+  + + +  
Sbjct: 218 -------------RTDADSESDNSDNNTIFVQGLGEGVSTD----QVGEFFKQIGIIKTN 260

Query: 134 KASSFKKLQKFYIDPYKLLPLQRFLPRPPGE-----KGPPRGGGRGGRGGGRGGGG---- 184
           K +  K +   Y D        +   +P GE       PP          G+   G    
Sbjct: 261 KKTG-KPMINLYTD--------KDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIK 311

Query: 185 -----------RGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
                      RGGG GGG R     G GG+RG   GGF+GRG
Sbjct: 312 VSFATRRPEFMRGGGSGGGRR-----GRGGYRG--RGGFQGRG 347



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG--GGGGNFRGGGR 46
           R GG GG   GGG GG +RGG     RGG GG  GG  ++R   R
Sbjct: 542 RSGGYGGDRSGGGYGG-DRGGGYGGDRGGYGGKMGGRNDYRNDQR 585


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 35/61 (57%), Positives = 37/61 (60%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGGRGG--RGGGRGG---GGRGGGRGGGFRGGRGGGGGGFRGG----RGGGFR 213
           G  G   GGG GG   GGG GG   GG GG RGGG+ G RGGG GG RGG    RGGG+ 
Sbjct: 436 GYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYG 495

Query: 214 G 214
           G
Sbjct: 496 G 496



 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 34/60 (56%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRG---GGFRGGRGGGGGGFRGGRGGGFRGRG 216
           R  G  G  RGGG GG  GG  GG RGGG G   GG+ G RGGG GG RGG GG   G G
Sbjct: 450 RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG 509



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 35/57 (61%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 163 GEKGPPRGGGRGG-RGGGRGG--GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G  RGGG GG RGGG GG  GG GG RGGG+ G RGG GG  RGG GG   G G
Sbjct: 461 GGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD-RGGYGGDRGGYG 516



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 20/69 (28%)

Query: 169 RGGGRGGRGGGRGGGGRGGGR--------------------GGGFRGGRGGGGGGFRGGR 208
           RGG RGG GG R GGG GG R                    GGG+ G RGGG GG RGG 
Sbjct: 411 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 470

Query: 209 GGGFRGRGH 217
            GG RG G+
Sbjct: 471 YGGDRGGGY 479



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 33/59 (55%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG--RGGGRGGFNKG 61
           GGG GG +R GGG G +RGG     RGGG GG  G   GG RGG+G  RGGG GG   G
Sbjct: 443 GGGYGG-DRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 500



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 34/58 (58%), Positives = 37/58 (63%), Gaps = 5/58 (8%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRG--GGFRGGRGGGGGGFRGGRG--GGFRGRG 216
           G++G   GG RGG GG R GGG GG RG  GG RGG GG  GG+ G RG  GG R RG
Sbjct: 473 GDRGGGYGGDRGGYGGDR-GGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRG 529



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/65 (50%), Positives = 37/65 (56%), Gaps = 13/65 (20%)

Query: 163 GEKGPPRGGGRGGR----GGGRGGGGRGGGR--GGGFRGGRGGG-------GGGFRGGRG 209
           GE+G    GGRGG     GG R GGG GG R  GGG+ G R GG       GGG+ G RG
Sbjct: 401 GERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRG 460

Query: 210 GGFRG 214
           GG+ G
Sbjct: 461 GGYGG 465



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/58 (56%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 163 GEKGPPRGGGRGG-RGGGRGG---GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G   GGG GG RGGG GG   GG GG RGGG+ G RGG GG   GG GG   G G
Sbjct: 445 GYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYG 502



 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 31/56 (55%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGR 215
           R  G  G  RGGG  G GG R GG  G   GGG+ G RGGG GG RGG GG   GR
Sbjct: 526 RSRGGYGGDRGGG-SGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGR 580



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 10/67 (14%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-----GRGGGRGGF 58
           RGGG GG +RGGG GG +RGG     RGG GG  GG + GG RGG+     G GG RGG+
Sbjct: 459 RGGGYGG-DRGGGYGG-DRGGGYGGDRGGYGGDRGGGY-GGDRGGYGGDRGGYGGDRGGY 515

Query: 59  NKGQDQG 65
             G D+G
Sbjct: 516 --GGDRG 520



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 34/59 (57%), Positives = 35/59 (59%), Gaps = 7/59 (11%)

Query: 163 GEKGPPRGG-----GRGGRGGGRGGG-GRGGGRGGGFRGGRGGGG-GGFRGGRGGGFRG 214
           G  G  RGG      RGG GG RGGG G GG R GG+ G R GGG GG RGG  GG RG
Sbjct: 513 GGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRG 571



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 32/61 (52%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG  G   GGG GG   GG     RGGG GG  G   GG RGG G GG RGG+  G D+
Sbjct: 434 GGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG-GYGGDRGGY--GGDR 490

Query: 65  G 65
           G
Sbjct: 491 G 491



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 12/64 (18%)

Query: 163 GEKGPPRGGGRGGRGGGRGG-----GGRGGGRGG-------GFRGGRGGGGGGFRGGRGG 210
           G++G   GG RGG GG RGG     GG GG RGG       G  GG  GGG G+ G R G
Sbjct: 488 GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 547

Query: 211 GFRG 214
           G+ G
Sbjct: 548 GYGG 551



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG GG +RGGG GG +RGG     RGGG GG  G + GG RGG G GG RGG+  G D+
Sbjct: 452 GGGYGG-DRGGGYGG-DRGGGYGGDRGGGYGGDRGGY-GGDRGG-GYGGDRGGY--GGDR 505

Query: 65  G 65
           G
Sbjct: 506 G 506



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 9/67 (13%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-----GRGGGRGGF 58
           RGGG GG +RGGG GG +RGG     RGGG GG  G + GG RGG+     G GG RGG+
Sbjct: 467 RGGGYGG-DRGGGYGG-DRGGYGGD-RGGGYGGDRGGY-GGDRGGYGGDRGGYGGDRGGY 522

Query: 59  NKGQDQG 65
              + +G
Sbjct: 523 GGDRSRG 529



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/62 (54%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 163 GEKGPPRGGGRGGRGGGRGG--GGRGGGRG--GGFRGGRGGGGGGFRGGRG----GGFRG 214
           G  G  RGG  G RGGG GG  GG GG RG  GG RGG GG  GG+ G R     GG RG
Sbjct: 477 GGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRG 536

Query: 215 RG 216
            G
Sbjct: 537 GG 538



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 30/59 (50%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 159 PRPPGEK---GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           PRP   +   G  RG G GG  G RG GGRGG R GG+ G R GGG G     GGG+ G
Sbjct: 382 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDR-GGYGGDRSGGGYGGDRSSGGGYSG 439



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 37/75 (49%), Positives = 42/75 (56%), Gaps = 14/75 (18%)

Query: 4   RGGGRGGF--NRGGGGGGFNR--GGSSNHFRGGGG------GGGGGNFRGGGRGGF---G 50
           RGG RGG+  +R GGG G +R  GG  +  R GGG      GGG G  RGGG GG    G
Sbjct: 411 RGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGG 470

Query: 51  RGGGRGGFNKGQDQG 65
            GG RGG   G D+G
Sbjct: 471 YGGDRGG-GYGGDRG 484



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 5   GGGRGGFNRGGGGGGFNRGG-SSNHFRGG-GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GG RGG+    GG G +RGG   +  RGG GG  GGG+  GG R G G GG R G   G 
Sbjct: 502 GGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG-GYGGDRSGGGYGG 560

Query: 63  DQG 65
           D+G
Sbjct: 561 DRG 563



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 9/65 (13%)

Query: 5   GGGRGGF--NRGGGGGGFNRGGSSNHFRGGGGGGG------GGNFRGGGRGGFGRGGGRG 56
           GG RGG+  +RGG GG  +RGG      GG G GG      GG+  GGG GG  RGGG G
Sbjct: 509 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGG-DRGGGYG 567

Query: 57  GFNKG 61
           G   G
Sbjct: 568 GDRGG 572



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 8/63 (12%)

Query: 5   GGGRGGF--NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GG RGG+  +RGGG GG +RGG     RGG GG  GG   GG RGG+G    RGG+  G 
Sbjct: 480 GGDRGGYGGDRGGGYGG-DRGGYGGD-RGGYGGDRGG--YGGDRGGYGGDRSRGGY--GG 533

Query: 63  DQG 65
           D+G
Sbjct: 534 DRG 536



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 32/66 (48%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG----GGGGNFRGGGRG-GFGRGGGRGGFN 59
           GG RGG+    GG G +RGG     RGG GG    GG G  RGGG G G  R GG GG  
Sbjct: 495 GGDRGGYGGDRGGYGGDRGGYGGD-RGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDR 553

Query: 60  KGQDQG 65
            G   G
Sbjct: 554 SGGGYG 559



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 35/76 (46%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 3   FRGGGRGGFN--RGGGGGGFNRGGSSNHFRGGG-------GGGGGGNFRGGG----RGGF 49
           FRG G GG    RG GG G +RGG      GGG       GGG  G+  GGG    R G 
Sbjct: 394 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGG 453

Query: 50  GRGGGRGGFNKGQDQG 65
           G GG RGG   G D+G
Sbjct: 454 GYGGDRGG-GYGGDRG 468



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGG--GGNFRGGGRGGF-GRGGGRGGFNKGQ 62
           GG GG   GG G G +R G     R GGG GG  GG + GG RGG+ G+ GGR  +   Q
Sbjct: 529 GGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGY-GGDRGGYGGKMGGRNDYRNDQ 587

Query: 63  DQGP 66
              P
Sbjct: 588 RNRP 591



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 27/58 (46%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           RGGG GG   G GG     GG    + G  GG GG   RGG  G  G G G GG   G
Sbjct: 490 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 547



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 77/278 (27%), Positives = 94/278 (33%), Gaps = 90/278 (32%)

Query: 9   GGFNRGGGG---GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQD-- 63
           G  NRG GG   GG  RGG     RG   G  GG+     RGGF   GG   +    D  
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGD-----RGGFKNFGGHRDYGPRTDAD 225

Query: 64  -------------QGPPERVVL--LGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKE 108
                        QG  E V    +GEF       I    T  +   P  N     +  +
Sbjct: 226 SESDNSDNNTIFVQGLGEGVSTDQVGEFFK----QIGIIKTNKKTGKPMINLYTDKDTGK 281

Query: 109 QIGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPP 168
             G+    F        ++   +          ++F+ +  K+    R   RP   +G  
Sbjct: 282 PKGEATVSFDDPPSAKAAIDWFDG---------KEFHGNIIKVSFATR---RPEFMRGGG 329

Query: 169 RGGGRGGRGGGRGGG---GRGG-------------------------------------- 187
            GGGR GRGG RG G   GRGG                                      
Sbjct: 330 SGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRP 389

Query: 188 ------GRG-GGFRGGRG-GGGGGFRGGRGGGFRGRGH 217
                 GRG GG RG RG GG GG RGG GG   G G+
Sbjct: 390 SGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGY 427



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 27/54 (50%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 164 EKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG-GGFRGRG 216
           E  P      GG   GRG GG  G RG G RGG  GG GG R G G GG R  G
Sbjct: 381 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSG 434



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 34/100 (34%), Positives = 37/100 (37%), Gaps = 38/100 (38%)

Query: 4   RGGGRGGFNRGGGG----GGFN-RGGSS--------------------------NHFRGG 32
           RGGG GG  RG GG    GGF  RGG                            N  R  
Sbjct: 326 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 385

Query: 33  GGGGGGGNFRGGGRGGF-------GRGGGRGGFNKGQDQG 65
                GG+FRG G GG        GRGG RGG+   +  G
Sbjct: 386 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGG 425



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 57/223 (25%), Positives = 79/223 (35%), Gaps = 67/223 (30%)

Query: 21  NRGGSSNHFRGG--GGGGGGGNFRGGGRGGF--GRGGGRGGFNK---GQDQGPPERVVLL 73
           +R G  N   GG  GGG G G +   GRG      GG RGGF      +D GP       
Sbjct: 168 SRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGP------- 220

Query: 74  GEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENM 133
                        +   D       N  ++++   +    D    Q+ +F+  + + +  
Sbjct: 221 -------------RTDADSESDNSDNNTIFVQGLGEGVSTD----QVGEFFKQIGIIKTN 263

Query: 134 KASSFKKLQKFYIDPYKLLPLQRFLPRPPGE-----KGPPRGGGRGGRGGGRGGGG---- 184
           K +  K +   Y D        +   +P GE       PP          G+   G    
Sbjct: 264 KKTG-KPMINLYTD--------KDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIK 314

Query: 185 -----------RGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
                      RGGG GGG R     G GG+RG   GGF+GRG
Sbjct: 315 VSFATRRPEFMRGGGSGGGRR-----GRGGYRG--RGGFQGRG 350



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGG--GGGGNFRGGGR 46
           R GG GG   GGG GG +RGG     RGG GG  GG  ++R   R
Sbjct: 545 RSGGYGGDRSGGGYGG-DRGGGYGGDRGGYGGKMGGRNDYRNDQR 588


>gi|195972866 keratin 10 [Homo sapiens]
          Length = 584

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 33/63 (52%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR--GGFNKGQ 62
           GGGRGG + GGG GG + GG S+   GGG GGG G   GGG GG   GGG   GG+  G 
Sbjct: 461 GGGRGGGSFGGGYGGGSSGGGSS---GGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGS 517

Query: 63  DQG 65
             G
Sbjct: 518 SSG 520



 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 31/62 (50%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGG-GNFRGGGRGGFGRGGGRGGFNKGQD 63
           GGG GG + GG GGG + GGSS    GGG   GG G    GG GG   GGG GG+  G  
Sbjct: 488 GGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSS 547

Query: 64  QG 65
            G
Sbjct: 548 GG 549



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 5   GGGRGGFNRGGG--GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GGG GG + GGG  GGG+  G SS    G   GG GG   GGG GG+G G   GG + G 
Sbjct: 496 GGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGG 555

Query: 63  DQG 65
             G
Sbjct: 556 GYG 558



 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 32/60 (53%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 163 GEKGPPRGGGRGG--RGGGRGGGGRGGGRGGGFRGGRGGG---GGGFRGGRGGGFRGRGH 217
           G  G   GGG GG   GGG  GGG GGG GG   GG GGG   GG   GG GGG    GH
Sbjct: 463 GRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGH 522



 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 27/55 (49%), Positives = 28/55 (50%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
           G  G    GG GG   G  GGG  GG GGG+ GG  GGG    GG GGG    GH
Sbjct: 512 GYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGH 566



 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 32/58 (55%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 163 GEKGPPRGGGRGG-RGGGRGGGGRGGG-RGGGFRGG--RGGGGGGFRGGRGGGFRGRG 216
           G  G   GGG GG  GGG GGG  GGG  GGG+ GG   GG GG   GG GGG  G G
Sbjct: 481 GSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGG 538



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 29/57 (50%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 163 GEKGPPRGGGR--GGRGGGRGGGGRGGGRGGGFRGG-RGGGGGGFRGGRGGGFRGRG 216
           G  G   GGG   GG GGG   GG GG   GG+ GG  GGGGGG+ GG  GG    G
Sbjct: 498 GYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSG 554



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 28/56 (50%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGR---GGFGRGGGRGG 57
           GGG GG +  GG GG + GG      GGGGGG GG   GGG    GG+G G   GG
Sbjct: 510 GGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGG 565



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGG-GGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
           SF GG  GG + GG  GG + GG      GG GGG  GG   GGG GG    GG GG + 
Sbjct: 468 SFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSS 527

Query: 61  G 61
           G
Sbjct: 528 G 528



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGG-GGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           RGGG  G   GG GGG + GGSS    GGG GG  GG + GG  GG   GGG GG +   
Sbjct: 464 RGGGSFG---GGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSG 520

Query: 63  DQG 65
             G
Sbjct: 521 GHG 523



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 26/49 (53%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G   GGG GG  GG  GGG GGG  GG   G G GGG   GG GG   G
Sbjct: 480 GGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSG 528



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/44 (63%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 174 GGRGGGRGGGGRGGGR-GGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  GG  GGG  GGG  GGG  GG G GGGGF GG GGGF G G
Sbjct: 96  GSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDG 139



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 31/55 (56%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 166 GPPRGGGR--GGRGGG-RGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
           G  RGGG   GG GGG  GGG  GGG GGG  G  GGG GG  G  GGG  G G+
Sbjct: 461 GGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGG--GSSGGGSSGGGY 513



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 3   FRGGGRGGFNRGGG-GGGFNRGG----SSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           + GG  GG + GGG GGG + GG    SS  + GG  GGGGG + GG  GG    G  GG
Sbjct: 499 YGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSG--GG 556

Query: 58  FNKGQDQG 65
           +  G   G
Sbjct: 557 YGGGSSSG 564



 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 29/63 (46%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGG--GGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GGG  G   GGG GG + GG      GGG  GGG GG    GG GG   GG  GG + G 
Sbjct: 479 GGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGG 538

Query: 63  DQG 65
             G
Sbjct: 539 GGG 541



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 34/67 (50%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 5   GGGRGGFNR-GGGGGGFNRGG-SSNHFRG------GGGGGGGGNFRGG--GRGGFGRGGG 54
           GG  GG+   GG GGG  RG   S+ F G      GGG  GGG+F GG  G GGFG GG 
Sbjct: 68  GGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGF 127

Query: 55  RGGFNKG 61
            GGF  G
Sbjct: 128 GGGFGGG 134



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 29/48 (60%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 172 GRGGRGGGRGGGGRGGGR-GGGFRGG--RGGGGGGFRGGRGGGFRGRG 216
           G GGRGGG  GGG GGG  GGG  GG   GG GG   GG GGG  G G
Sbjct: 460 GGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGG 507



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 27/45 (60%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G G  G GGGRGGG  GGG GGG  GG G  GGG  GG GG   G
Sbjct: 455 GEGSSG-GGGRGGGSFGGGYGGGSSGG-GSSGGGHGGGHGGSSGG 497



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 25/49 (51%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G   GG  GG  GG  GG  GGG GGG  GG G  GGG+ GG   G  G
Sbjct: 476 GSSGGGSSGGGHGGGHGGSSGGGYGGGSSGG-GSSGGGYGGGSSSGGHG 523



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 28/55 (50%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 163 GEKGPPRGGGRGGRGGG-RGGGGRGGGRGGGFRGG--RGGGGGGFRGGRGGGFRG 214
           G  G   GG  GG  GG   GGG GGG   G  GG   GG GGG  GG GGG+ G
Sbjct: 490 GHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGG 544



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 28/53 (52%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGG 54
           SF G   G F  G  GGG   GGS      GGGG GGG F GG  GGFG  GG
Sbjct: 93  SFGGSYGGSFGGGSFGGGSFGGGSF-----GGGGFGGGGFGGGFGGGFGGDGG 140



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
           GG GG + GGGGGG+  GGSS     GGG   GG + GG   G  +    G   +   +G
Sbjct: 528 GGYGGGSSGGGGGGYG-GGSS-----GGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKG 581

Query: 66  P 66
           P
Sbjct: 582 P 582



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 32/78 (41%), Positives = 36/78 (46%), Gaps = 17/78 (21%)

Query: 5  GGGRGGFNRGGG-------------GGGFNRGGSS--NHFRGGGGGG--GGGNFRGGGRG 47
          GGG GG   GGG             GGGF+ GG S  +  RG  GGG  GG +   GG G
Sbjct: 19 GGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLG 78

Query: 48 GFGRGGGRGGFNKGQDQG 65
          GFG G  RG +      G
Sbjct: 79 GFGGGSFRGSYGSSSFGG 96



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 16/64 (25%)

Query: 169 RGGGRGGRGGGRGGGG-------------RGGGRGGGFRGG---RGGGGGGFRGGRGGGF 212
           R GG GG GG  GGGG              GG   GGF GG   RG  GGG  GG  GG+
Sbjct: 15  RSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGY 74

Query: 213 RGRG 216
            G G
Sbjct: 75  GGLG 78



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 24/52 (46%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G  G   GG  GG  GG GGG  GG  GGG   G G GGG   GG      G
Sbjct: 521 GHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSG 572



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/64 (43%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRG-GGRGGFNK 60
           SFRG        G  GG F  G       GGG  GGGG   GG  GGFG G GG GG   
Sbjct: 84  SFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGGLLS 143

Query: 61  GQDQ 64
           G ++
Sbjct: 144 GNEK 147



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 33/75 (44%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 2  SFRGGGRGGFNRGGGGGGFN--RGGSSNHFRGGG---GGGGGGNFRGGGRGG------FG 50
          S R GG GG    GGGGG +  R  SS    GGG   GG  GG+F  G  GG       G
Sbjct: 13 SSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSG 72

Query: 51 RGGGRGGFNKGQDQG 65
            GG GGF  G  +G
Sbjct: 73 GYGGLGGFGGGSFRG 87



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 27/52 (51%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 15  GGGGGFNRGGSSNHFRGG-GGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
           G  GG  RGG S  F GG GGG  GG   GGG GG G GG  GG   G   G
Sbjct: 457 GSSGGGGRGGGS--FGGGYGGGSSGGGSSGGGHGG-GHGGSSGGGYGGGSSG 505



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 28/55 (50%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 171 GGRGGRGGGRGGGGRG-------GGRGGGFRGGRGGGGGGFRGGR--GGGFRGRG 216
           GG GG GG  GG  RG       GG  GG  GG   GGG F GG   GGGF G G
Sbjct: 72  GGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGG 126



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 24/44 (54%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 172 GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGR-GGGFRG 214
           G    GG  GG   GG  GGG  GG   GGGGF GG  GGGF G
Sbjct: 90  GSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGG 133



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 22/37 (59%), Positives = 22/37 (59%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG 206
           GGG  G G   GGG  GGG GGGF GG GG GG   G
Sbjct: 108 GGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGGLLSG 144



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/44 (50%), Positives = 22/44 (50%)

Query: 171 GGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           GG    GG  GG    G  GGG  GG  GG GG  G  GG FRG
Sbjct: 44  GGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRG 87



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 26/46 (56%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGR--GGGFRGGRGGGGGGFRG 206
           G  G   GGG  G GG  GGG  GGG   GGGF GG GGG GG  G
Sbjct: 96  GSYGGSFGGGSFG-GGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGG 140



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 170 GGGRGGR-GGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           GG  GG    G  GGG  GG  GG+ G  G GGG FRG  G    G
Sbjct: 50  GGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFG 95



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 31/64 (48%), Positives = 31/64 (48%), Gaps = 19/64 (29%)

Query: 170 GGGRGGRGGGRG-------------GGG--RGGGRGGGF-RGGRGGG-GGGFRGGRG--G 210
           GGG GG GGG G             GGG   GG  GG F RG  GGG  GG  GG G  G
Sbjct: 19  GGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLG 78

Query: 211 GFRG 214
           GF G
Sbjct: 79  GFGG 82



 Score = 37.0 bits (84), Expect = 0.013
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRG 56
           + GG  GG   G GGG  + GG S+   G GGG   G  +    G  G    +G
Sbjct: 530 YGGGSSGGGGGGYGGG--SSGGGSSSGGGYGGGSSSGGHKSSSSGSVGESSSKG 581



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55
           GGG GG+  G  GGG + GG    + GG   GG  +   G  G     G R
Sbjct: 536 GGGGGGYGGGSSGGGSSSGGG---YGGGSSSGGHKSSSSGSVGESSSKGPR 583



 Score = 34.7 bits (78), Expect = 0.064
 Identities = 16/27 (59%), Positives = 16/27 (59%)

Query: 190 GGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G G  GG G GGG F GG GGG  G G
Sbjct: 455 GEGSSGGGGRGGGSFGGGYGGGSSGGG 481



 Score = 32.0 bits (71), Expect = 0.41
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 22 RGGSSNHFRGGGGGGGGGNFRGGGRGGF-------GRGGGRGGFNKGQDQG 65
          R  SS H+     GGGGG    GG GG         +G   GGF+ G   G
Sbjct: 4  RYSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSG 54



 Score = 31.2 bits (69), Expect = 0.71
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 33  GGGGGGGNFRGGGRGGFGRGGG-RGGFNKGQDQG 65
           G G  GG  RGGG  G G GGG  GG + G   G
Sbjct: 455 GEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHG 488


>gi|47132620 keratin 2 [Homo sapiens]
          Length = 639

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 34/54 (62%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G    GG GGRGGG GGG   GG G GF GG G GGGGF GGR GGF G G
Sbjct: 79  GGGGFGAAGGFGGRGGGFGGGSSFGG-GSGFSGG-GFGGGGFGGGRFGGFGGPG 130



 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 37/77 (48%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-GGRGGFGRGGGRGGFNKGQ 62
           RGGG GG +  GGG GF+ GG       GGGG GGG F G GG GG G  GG GGF  G 
Sbjct: 92  RGGGFGGGSSFGGGSGFSGGGF------GGGGFGGGRFGGFGGPGGVGGLGGPGGFGPGG 145

Query: 63  DQGPPERVVLLGEFLHP 79
             G    V +    L P
Sbjct: 146 YPGGIHEVSVNQSLLQP 162



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 36/84 (42%), Positives = 37/84 (44%), Gaps = 26/84 (30%)

Query: 1   MSFRGGGRGGFNRGG---------------------GGGGFNR----GGSSNHFRGGGGG 35
           +S  GGG GGF  GG                     GGGGF      GG    F GG   
Sbjct: 43  LSRHGGGGGGFGGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSF 102

Query: 36  GGGGNFRGGGRGGFGRGGGR-GGF 58
           GGG  F GGG GG G GGGR GGF
Sbjct: 103 GGGSGFSGGGFGGGGFGGGRFGGF 126



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 31/53 (58%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRG-GGFRGRGH 217
           G   GGG G  GGG GGGG GGGR GGF G  G GG G  GG G GG+ G  H
Sbjct: 99  GSSFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGGPGGFGPGGYPGGIH 151



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 4   RGGGRGGFNRGGG--GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG-----RGGGRG 56
           + G RGG   GG   GGG+  GG S    G GGG  GG+  GGG G  G      GG RG
Sbjct: 545 QSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRG 604

Query: 57  GFNKGQDQG 65
           G + G   G
Sbjct: 605 GSSSGGGYG 613



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 34/66 (51%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
           GGG G     GG GG   GGSS  F GG    GGG GGG F GG  GGFG  GG GG   
Sbjct: 80  GGGFGAAGGFGGRGGGFGGGSS--FGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGG 137

Query: 61  GQDQGP 66
               GP
Sbjct: 138 PGGFGP 143



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 30/66 (45%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG------GGGGGGGNFRGGGRGGFGRGGGRGGFN 59
           GG GG  RG   GG    GSS++  GG      GG GGGG+  GGG G  G  GGR G  
Sbjct: 519 GGSGG--RGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSG 576

Query: 60  KGQDQG 65
            G   G
Sbjct: 577 GGSKGG 582



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 6   GGRGGFNRGG---GGGGFNRGGSSNHFRGGGGGGG----GGNFRGGGRGG-FGRGGG-RG 56
           GGRG  + GG   G   +  GG  +  RGG GGGG    GG   GGG GG +G GGG +G
Sbjct: 522 GGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKG 581

Query: 57  GFNKGQDQG 65
           G   G   G
Sbjct: 582 GSISGGGYG 590



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG--RGGGFRGRG 216
           G  + G RGG GGG    G G G GGG  GGR G GGG +GG   GGG+   G
Sbjct: 542 GGRQSGSRGGSGGGGSISGGGYGSGGG-SGGRYGSGGGSKGGSISGGGYGSGG 593



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 160 RPPGEKGPPRGGGR---GGRGGGRGGGGR----GGGRGGGFRGGRGGGGGGFRGGRGGGF 212
           R  G +G   GGG    GG G G G GGR    GG +GG   GG  G GGG +   GGG 
Sbjct: 544 RQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGG-KHSSGGGS 602

Query: 213 RG 214
           RG
Sbjct: 603 RG 604



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 30/65 (46%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 5   GGGR---GGFNRGGGGGG-FNRGGSS--NHFRGGGGGGGGGNFR--GGGRGGFGRGGGRG 56
           GGG    GG+  GGG GG +  GG S      GGG G GGG     GG RGG   GGG G
Sbjct: 554 GGGSISGGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYG 613

Query: 57  GFNKG 61
               G
Sbjct: 614 SGGGG 618



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 170 GGGRGGR----GGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG--RGGGFRGRG 216
           GGG GGR    GG +GG   GGG G G  GG+   GGG RGG   GGG+   G
Sbjct: 566 GGGSGGRYGSGGGSKGGSISGGGYGSG--GGKHSSGGGSRGGSSSGGGYGSGG 616



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 163 GEKGPPRGGGRGGRGGGR---GGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGF 212
           G KG    GG  G GGG+   GGG RGG   GG  G  GGG    +G  G  F
Sbjct: 578 GSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGEAF 630



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 28/56 (50%), Positives = 29/56 (51%), Gaps = 13/56 (23%)

Query: 171 GGRGGRGGGRGGGGRGG-------GRGGGFRGGRGGGG----GGFRGGRGGGFRGR 215
           GG GGRG   GGG   G       GR  G RGG GGGG    GG+  G GGG  GR
Sbjct: 519 GGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGY--GSGGGSGGR 572



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 34/86 (39%), Positives = 34/86 (39%), Gaps = 30/86 (34%)

Query: 4  RGGGRGGFNRGGGGGGFNRGGS----------SNHFRGGGGGG-GGGNFR---------- 42
          RGGG GGF     G     GGS          S H  GGGGGG GGG F           
Sbjct: 12 RGGGGGGFRGFSSGSAVVSGGSRRSTSSFSCLSRH--GGGGGGFGGGGFGSRSLVGLGGT 69

Query: 43 -------GGGRGGFGRGGGRGGFNKG 61
                  GG GGFG  GG GG   G
Sbjct: 70 KSISISVAGGGGGFGAAGGFGGRGGG 95



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 30/55 (54%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 169 RGGGRGGR---GGGRG--GGGRGGGRGGGFRGGRGGGGGGFRG-GRGGGFRGRGH 217
           RGGG GG    GGG G  GGG GGG  GG R G  GG GG  G G  GGF   G+
Sbjct: 92  RGGGFGGGSSFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGGPGGFGPGGY 146



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 24/52 (46%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGG-----RGGGFRGGRGGGGGGFRGGRG 209
           G  G   G G G +GG   GGG G G      GGG RGG   GGG   GG G
Sbjct: 567 GGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGG 618



 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 29/63 (46%), Positives = 32/63 (50%), Gaps = 14/63 (22%)

Query: 163 GEKGPPRGGG---------RGGRGGGRGGGGRGGGR--GGGFRGGRGGGGGGFRGGRGGG 211
           G +G   GGG          GGR  G  GG  GGG   GGG+  G GGG GG R G GGG
Sbjct: 522 GGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGY--GSGGGSGG-RYGSGGG 578

Query: 212 FRG 214
            +G
Sbjct: 579 SKG 581



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 28/58 (48%), Positives = 30/58 (51%), Gaps = 13/58 (22%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK 60
           F GGG GG   GG GGG          R GG GG GG    GG GGFG GG  GG ++
Sbjct: 108 FSGGGFGG---GGFGGG----------RFGGFGGPGGVGGLGGPGGFGPGGYPGGIHE 152



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 26/54 (48%), Positives = 26/54 (48%), Gaps = 15/54 (27%)

Query: 176 RGGGRGGGGRGGGRGGGFRGGRG----------GGGGGFR-----GGRGGGFRG 214
           R GG GGG  GGG G     G G          GGGGGF      GGRGGGF G
Sbjct: 45  RHGGGGGGFGGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGG 98



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 5   GGGRGGFNRGGG---------GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG 50
           GG +GG   GGG          GG +RGGSS+    G GGGG  + +G     FG
Sbjct: 577 GGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGEAFG 631



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 15/50 (30%)

Query: 175 GRGGGRGGGGRGGGRGGGFRGG--------------RGGGGGGFRGGRGG 210
           GRGGG GGG RG   G     G               GGGGGGF GG  G
Sbjct: 11  GRGGG-GGGFRGFSSGSAVVSGGSRRSTSSFSCLSRHGGGGGGFGGGGFG 59



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 170 GGGR----GGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFR 213
           GGG+    GG  GG   GG  G  GGG    +G  G  F       FR
Sbjct: 592 GGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGEAFGSSVTFSFR 639



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGN 40
           GG RGG + GGG G  + GG S+  +G  G   G +
Sbjct: 600 GGSRGGSSSGGGYG--SGGGGSSSVKGSSGEAFGSS 633



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/46 (41%), Positives = 19/46 (41%), Gaps = 17/46 (36%)

Query: 33 GGGGGGGNFRGGGRG-----GFGR------------GGGRGGFNKG 61
          G GGGGG FRG   G     G  R            GGG GGF  G
Sbjct: 11 GRGGGGGGFRGFSSGSAVVSGGSRRSTSSFSCLSRHGGGGGGFGGG 56


>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
          Length = 1270

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 12/76 (15%)

Query: 2    SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-GRGG------- 53
            S+ GGG GG    GG G    GGS+N FR G G G GG +RG  RGGF G  G       
Sbjct: 1179 SYSGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAGVGGGYRGVSRGGFRGNSGGDYRGPS 1238

Query: 54   ----GRGGFNKGQDQG 65
                G GGF +G  +G
Sbjct: 1239 GGYRGSGGFQRGGGRG 1254



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 34/64 (53%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 2    SFRGG---GRGGFNRGGGGGGFNRGGSSNHFRGGGGG--GGGGNFRGGGRGGFGR---GG 53
            SFR G   G GG  RG   GGF RG S   +RG  GG  G GG  RGGGRG +G    G 
Sbjct: 1205 SFRAGYGAGVGGGYRGVSRGGF-RGNSGGDYRGPSGGYRGSGGFQRGGGRGAYGTGYFGQ 1263

Query: 54   GRGG 57
            GRGG
Sbjct: 1264 GRGG 1267



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 11/59 (18%)

Query: 8    RGGFNRGGGGG--GFNRGGSSNHFRGGGGG---GGGGNFRGGGRGGFGRGGGRGGFNKG 61
            R G+  G GGG  G +RGG    FRG  GG   G  G +RG   GGF RGGGRG +  G
Sbjct: 1207 RAGYGAGVGGGYRGVSRGG----FRGNSGGDYRGPSGGYRGS--GGFQRGGGRGAYGTG 1259



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 35/78 (44%), Positives = 36/78 (46%), Gaps = 22/78 (28%)

Query: 159  PRPP------GEKGPPRGGGR---GGRGGGRGGGGRGGGRGGG----FRGGRG---GGG- 201
            PRPP         G  RGG     GG GGG   GG G G  GG    FR G G   GGG 
Sbjct: 1159 PRPPKMARYDNGSGYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAGVGGGY 1218

Query: 202  -----GGFRGGRGGGFRG 214
                 GGFRG  GG +RG
Sbjct: 1219 RGVSRGGFRGNSGGDYRG 1236



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 27/64 (42%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 163  GEKGPPRGGGRGGRGGGRGGGGRG-------GGRGGGFRGGRGG--GGGGFRGGRGGGFR 213
            G  G      R G G G GGG RG       G  GG +RG  GG  G GGF+ G G G  
Sbjct: 1197 GGYGGSANSFRAGYGAGVGGGYRGVSRGGFRGNSGGDYRGPSGGYRGSGGFQRGGGRGAY 1256

Query: 214  GRGH 217
            G G+
Sbjct: 1257 GTGY 1260



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 163  GEKGPPRGGGRGGRGGGRGGGGRGGGRG-GGFR--GGRGGGGGGFRG-GRGGG 211
            G +G  RGG RG  GG   G   GG RG GGF+  GGRG  G G+ G GRGGG
Sbjct: 1217 GYRGVSRGGFRGNSGGDYRGPS-GGYRGSGGFQRGGGRGAYGTGYFGQGRGGG 1268



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 163  GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
            G  G  RG  RGG  G  GG  RG    GG+RG  G   GG RG  G G+ G+G
Sbjct: 1213 GVGGGYRGVSRGGFRGNSGGDYRGPS--GGYRGSGGFQRGGGRGAYGTGYFGQG 1264



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 13   RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
            R   G G+ RGGSS       GGG GG +  GG G  G GG    F  G   G
Sbjct: 1166 RYDNGSGYRRGGSSY-----SGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAG 1213



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 25/45 (55%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 163  GEKGPPRGGGRGGRGGGRGGGG--RGGGRG----GGFRGGRGGGG 201
            G +G   G  RG  GG RG GG  RGGGRG    G F  GRGGGG
Sbjct: 1225 GFRGNSGGDYRGPSGGYRGSGGFQRGGGRGAYGTGYFGQGRGGGG 1269



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 17/70 (24%)

Query: 10   GFNRGGG---GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGG-------RGGF- 58
            G+ RGG    GGG+  G SS  +  GG GG   +FR G    +G G G       RGGF 
Sbjct: 1172 GYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAG----YGAGVGGGYRGVSRGGFR 1227

Query: 59   -NKGQD-QGP 66
             N G D +GP
Sbjct: 1228 GNSGGDYRGP 1237


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 32/57 (56%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGG--GFRGGRG---GGGGGFRGGRGGGFRG 214
           G  G    G RGG GG  GGGG GGG GG  G RGG G   GGG G  GG GGG+ G
Sbjct: 480 GSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGG 536



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 33/61 (54%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGG---RGGRGGGRGGG-GRGGGRGGGFRGGRGGG-----GGGFRGGRGGGFR 213
           G  G   GGG   RGG GG  GGG G GGG GGG+ GG GGG     GGG  GG GG + 
Sbjct: 500 GGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYG 559

Query: 214 G 214
           G
Sbjct: 560 G 560



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 29/52 (55%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRG---GGGGGFRGGRGGGFRG 214
           G   GGG GG  GG  GGG  GG GGG  GG G   GGG G  GG GGG+ G
Sbjct: 523 GSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGG 574



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 29/63 (46%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGG--GGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           GG  G  +RGG GG +  GGS   + GG G  GG GG++ GG   G G GGG GG + G 
Sbjct: 482 GGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG 541

Query: 63  DQG 65
             G
Sbjct: 542 HSG 544



 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 32/61 (52%), Positives = 33/61 (54%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GGG GG +RG GG       SS  F GG GGG GG F GG   GFG  GG GG   G D 
Sbjct: 87  GGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDG 146

Query: 65  G 65
           G
Sbjct: 147 G 147



 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 4   RGGGRGGFNRGGGGGGF-----NRGGSSNHFRGG-GGGGGGGNFRGGGRGGFGRGGGRGG 57
           RGG  G +  GG GGG+     +RGGS   + GG G GGG G   GGG GG G  GG GG
Sbjct: 490 RGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGG-GHSGGSGG 548

Query: 58  FNKGQDQG 65
            + G   G
Sbjct: 549 GHSGGSGG 556



 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 28/56 (50%), Positives = 31/56 (55%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           S+ GG   G   GGG GG + GG S    GG  GG GGN+ GG   G G GGG GG
Sbjct: 519 SYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGG 574



 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 30/57 (52%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           GGG GG + GG GGG + G   N+  G G GGG G   GGG G  G  GG  G   G
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSG 591



 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 28/52 (53%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRG 56
           GGG GG   GG GGG + G    H  G GG  GGG+  GGG GG G GGG G
Sbjct: 527 GGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGG-GYGGGSG 577



 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 32/59 (54%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 163 GEKGPPRGGGRGGR------GGGRGGGGRG-GGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G  G   GGG GG       GGG GGG RG GG  GG     GG GGGF GG GGGF G
Sbjct: 67  GSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGG 125



 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 31/55 (56%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 163 GEKGPPRGGGRGGRGGGRGGG-GRGGGRGGGFRGGRG--GGGGGFRGGRGGGFRG 214
           G  G   GG  GG GG  GGG G GGG GGG+ GG G  GG GG  GG G GF G
Sbjct: 541 GHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGG-GSGFGG 594



 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 29/47 (61%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 171 GGRGGRGG--GRGG-GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           GGRGG GG  GRG  GG GG  GGG  GG  GGG G RGG GG + G
Sbjct: 476 GGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGG 522



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 28/55 (50%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 169 RGGGRGGRGGGRGGGGRGGGRG---------GGFRGGRGGGGGGFRGGRGGGFRG 214
           RGG  G  GGG  GGG GGG G         GG  G  GG GGG+ GG GGG  G
Sbjct: 490 RGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSG 544



 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 2   SFRGGGRGGF------NRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55
           S+ GGG GG       +RGG GG +  G  S    GGG GGG G    GG GG   GG  
Sbjct: 496 SYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG 555

Query: 56  GGFNKGQDQG 65
           G +  G   G
Sbjct: 556 GNYGGGSGSG 565



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 30/53 (56%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 170 GGGRGGRGGGRGGG---GRGGGRGGGFRGGRGGG---GGGFRGGRGGGFRGRG 216
           GG  GG GGG GGG   G GGG  GG  G  GGG   GGG  GG GGG   RG
Sbjct: 528 GGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRG 580



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 38/80 (47%), Positives = 41/80 (51%), Gaps = 19/80 (23%)

Query: 5   GGGRGGFNRGGG-GGGFNR-------GGSSNHFRG--GGG----GGGGGNFRGGGRGGFG 50
           GGG  G++ GGG GGGF+        GG S  F G  GGG    GG GG F GG  GGFG
Sbjct: 65  GGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFG 124

Query: 51  RG-----GGRGGFNKGQDQG 65
            G     GG GGF  G   G
Sbjct: 125 GGYGSGFGGFGGFGGGAGGG 144



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 31/57 (54%), Positives = 31/57 (54%), Gaps = 12/57 (21%)

Query: 170 GGGRGGRGGGRGGG---------GRGGGRGGGFRGGRG---GGGGGFRGGRGGGFRG 214
           GGG  G GG  GGG         G GGG GGGF GG G   GG GGF GG GGG  G
Sbjct: 91  GGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGG 147



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGG---GGNFRGGGRGGFGRGGGRGGFNKG 61
           GGRGG   GG  G  +RGGS   + GGG GGG   G   RGG  G +G G G GG + G
Sbjct: 476 GGRGG--SGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGG 532



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 29/58 (50%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           RGG  G +  G G GG + GG      GG  GG GG   GG  G +G G G GG + G
Sbjct: 513 RGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGG 570



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/56 (50%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 163 GEKGPPRGGGRGGRGGGRGG--GGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G   GGG G  GG  GG  GG GGG  GG  GG  GG GG  GG  G   G G
Sbjct: 514 GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSG 569



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/61 (45%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGG---------GFRGGRGGGFR 213
           G  G   GGG GG   G  GGG  GG GG + GG G GGG         G RGG GG   
Sbjct: 528 GGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHG 587

Query: 214 G 214
           G
Sbjct: 588 G 588



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 31/66 (46%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 2   SFRGGGRGGFNRG--GGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFN 59
           S+  G RGG      GGG G   GG S    G GG  GGG+  GGG GG G GGG GG +
Sbjct: 484 SYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGG-GYGGGSGGGH 542

Query: 60  KGQDQG 65
            G   G
Sbjct: 543 SGGSGG 548



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 5   GGGRGGFNRG---GGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           GGG GG + G   GG GG + GGS  ++ GG G GGG    GG  GG G  GG GG + G
Sbjct: 531 GGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSG--GGYGGGSGSRGGSGGSHGG 588



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 31/58 (53%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 163 GEKGPPRGGGRGGRGGGRG-GGGRGGGRGG--GFRGGRG---GGGGGFRGGRGGGFRG 214
           G  G   GG  G  GGG G GGG GGG GG  G RGG G   GGG GF G  GG + G
Sbjct: 545 GSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGG 602



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 27/45 (60%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
           G    GG GG  GG  GGG GGG G GF GG GG GGG  GG GG
Sbjct: 104 GYSSSGGFGGGFGGGSGGGFGGGYGSGF-GGFGGFGGGAGGGDGG 147



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 33/70 (47%), Positives = 34/70 (48%), Gaps = 23/70 (32%)

Query: 170 GGGRGGR--------GG-----GRGGGGR-----GGGRGGGFR-----GGRGGGGGGFRG 206
           GGG GGR        GG     GRGGGG      GGG GGGF      GG GGG  GF G
Sbjct: 40  GGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGG 99

Query: 207 GRGGGFRGRG 216
             GGG+   G
Sbjct: 100 ASGGGYSSSG 109



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 28/59 (47%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGG-----GRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G  G   GG  GG  GG GGG  GG     G G G  GG GGG GG  G RGG     G
Sbjct: 529 GSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHG 587



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 5   GGGRGGFNRGG-GGGGFNRGGSSNHFRGGGGGGG--GGNFRGGGRGGFGRGGGRGG 57
           G G GG + GG GGG  +RGGS     GG G GG  GG++ GGG    G GGG GG
Sbjct: 561 GSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSY-GGGEEASGSGGGYGG 615



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 26/51 (50%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG--GGGGFRGGRGGGFRG 214
           G   GGG GG  G RGG G   G G GF G  GG  GGG    G GGG+ G
Sbjct: 565 GGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGG 615



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 33/74 (44%), Positives = 36/74 (48%), Gaps = 17/74 (22%)

Query: 5   GGGRGGFNRGGG-GGGFNR------GGSSNHFRGGGGGGG------GGNFRGGGRGGFGR 51
           GGG G F+   G GGG +R      GGS  +  GGG GGG      GG F GG RG  G 
Sbjct: 41  GGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGA 100

Query: 52  GGG----RGGFNKG 61
            GG     GGF  G
Sbjct: 101 SGGGYSSSGGFGGG 114



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 25/86 (29%)

Query: 1  MSFRGGGRGG--------------FNRGGGGGGFNRGGSSNHFRGGG----GGGGGGNFR 42
          +S  GGG GG              F+  GGGGG  R  SS+ + GG     G GGGG+F 
Sbjct: 11 LSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFG 70

Query: 43 ----GGGRGGFGR---GGGRGGFNKG 61
              GG  GGF     GGG GG ++G
Sbjct: 71 YSYGGGSGGGFSASSLGGGFGGGSRG 96



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 27/49 (55%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGG--GGGGFRGGRGGGFRGRG 216
           G G+ G GG    GG GG  G G RGG GG  GGGG  GG GGG   RG
Sbjct: 469 GAGKIGLGGR---GGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRG 514



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 6   GGRGGFNRGGGG--GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRG 56
           GG+  F   G G  G   RGGS   +  G  GG GG++ GGG  G G GGG G
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGG-SGGGYGGGSG 511



 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 22/42 (52%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 169 RGGGRGGRGGGRGGGGR-GGGRGGGFRGGRGGGGGGFRGGRG 209
           RGG  G  GGG G GG  GG  GGG      G GGG+ GG G
Sbjct: 579 RGGSGGSHGGGSGFGGESGGSYGGGEEA--SGSGGGYGGGSG 618



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 29/66 (43%), Positives = 30/66 (45%), Gaps = 23/66 (34%)

Query: 170 GGGRGGRGGG-----------RGGGGRGGGR-------GGGFRG--GRGGGGG---GFRG 206
           GGG GG G G             GGG GGGR       GGG     GRGGGG     + G
Sbjct: 16  GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGG 75

Query: 207 GRGGGF 212
           G GGGF
Sbjct: 76  GSGGGF 81



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 26/54 (48%), Positives = 26/54 (48%), Gaps = 11/54 (20%)

Query: 169 RGGGRGGRGGGRGGGGR----------GGGRGGGFRGGRGGGGGGFR-GGRGGG 211
           R GG GG G G GG  R          GGG GG F    G GGG  R  GRGGG
Sbjct: 13  RSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66



 Score = 35.8 bits (81), Expect = 0.029
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 15  GGGGGFNRGGSSNHFRGGGGGGGGGNF----RGGGRGGFGRGGGRGGFNKG 61
           GG   F   G+      GG GG GG++    RGG  G +G GG  GG+  G
Sbjct: 460 GGQEDFESSGAGK-IGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGG 509



 Score = 35.4 bits (80), Expect = 0.038
 Identities = 21/41 (51%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGG 203
           G  G   GGG G      GG G G G  GGF GG GGG GG
Sbjct: 113 GGFGGGSGGGFG------GGYGSGFGGFGGFGGGAGGGDGG 147



 Score = 31.2 bits (69), Expect = 0.71
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 25 SSNHFRGGGGGGGGGNFRGGGRGGFGR------GGGRGGFNKGQDQG 65
          SS   R GGGGGGG    G  R  + R      GGG G F+     G
Sbjct: 8  SSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYG 54



 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 6   GGRGGFNRGGGGGGFNRGGSSNHFRGG----GGGGGGGNFRG 43
           GG GG + GG G G   GGS   + GG    G GGG G   G
Sbjct: 580 GGSGGSHGGGSGFGGESGGS---YGGGEEASGSGGGYGGGSG 618



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 12/41 (29%)

Query: 186 GGGRGGGFRGG------------RGGGGGGFRGGRGGGFRG 214
           GGG GGG   G             GGGGGG R     G+ G
Sbjct: 15  GGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGG 55



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 7/37 (18%)

Query: 5   GGGRG-GFNRGGG-GGGFNRGGSSNHFRGGGGGGGGG 39
           GGG G G   GG  GGG    GS     GGG GGG G
Sbjct: 587 GGGSGFGGESGGSYGGGEEASGS-----GGGYGGGSG 618


>gi|131412228 keratin 13 isoform b [Homo sapiens]
          Length = 420

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 170 GGGRGGRGGGRG---GGGRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GG  GG GGG     GGG G G GGG+ GG GGG GGG  GG GGGF G
Sbjct: 39  GGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAG 87



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/60 (55%), Positives = 34/60 (56%), Gaps = 15/60 (25%)

Query: 170 GGGRG-----------GRGGGRGGG---GRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GGGRG           G  GG GGG   G GGG G GF GG GGG GGG+ GG GGGF G
Sbjct: 24  GGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFGG 83



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 14/67 (20%)

Query: 5  GGGRG----------GFNRGGGGGGFN---RGGSSNHFRGGGGGGGGGNFRGGGRGGFGR 51
          GGGRG          G + GG GGG +    GG+ + F GG GGG GG + GG  GGFG 
Sbjct: 24 GGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFG- 82

Query: 52 GGGRGGF 58
          GG  GGF
Sbjct: 83 GGFAGGF 89



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 28/59 (47%), Positives = 30/59 (50%), Gaps = 14/59 (23%)

Query: 170 GGGRGGRGGGRG-------------GGGRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GGG    GGGRG              GG GGG   GF GG G G GGG+ GG GGG+ G
Sbjct: 17  GGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGG 75



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 25/49 (51%), Positives = 25/49 (51%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G   G G GG  GG  GGG GGG GGGF GG  GG   F    GG   G
Sbjct: 54  GGGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGGLLTG 102



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 16/60 (26%)

Query: 170 GGGRGGRGGGRGGGGRG----------GGRGGGFRGG-----RGGGGGGFRGGRGGGFRG 214
           GGG GG G  + GGGRG          GG  GG+ GG      GG G GF GG GGG  G
Sbjct: 13  GGGFGG-GSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGG 71



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/34 (61%), Positives = 21/34 (61%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGG 196
           G  G   GGG GG  GG  GGG GGG GGGF GG
Sbjct: 55  GGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAGG 88



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 5   GGGRGGFNRG-------GGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-GRGGGRG 56
           GG  GG+  G       G G GF  GG      GG GGG GG F GG  GGF   G   G
Sbjct: 39  GGSAGGYGGGVSCGFGGGAGSGFG-GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDG 97

Query: 57  GFNKGQDQ 64
           G   G ++
Sbjct: 98  GLLTGNEK 105



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-GGRGGFGRGGGRGG 57
          S+ GG  GG  + GGG G +   +     G  GG GGG   G GG  G G GGG GG
Sbjct: 11 SYGGGFGGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGG 67



 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 25 SSNHFRGGGGGGGGGNFRGGGRG------GFGRGGGRGGFNKGQDQG 65
          SS+   GGG GGG     GGGRG       F  GG  GG+  G   G
Sbjct: 7  SSSASYGGGFGGGSCQL-GGGRGVSTCSTRFVSGGSAGGYGGGVSCG 52


>gi|131412225 keratin 13 isoform a [Homo sapiens]
          Length = 458

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 30/49 (61%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 170 GGGRGGRGGGRG---GGGRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GG  GG GGG     GGG G G GGG+ GG GGG GGG  GG GGGF G
Sbjct: 39  GGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAG 87



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/60 (55%), Positives = 34/60 (56%), Gaps = 15/60 (25%)

Query: 170 GGGRG-----------GRGGGRGGG---GRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GGGRG           G  GG GGG   G GGG G GF GG GGG GGG+ GG GGGF G
Sbjct: 24  GGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFGG 83



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 14/67 (20%)

Query: 5  GGGRG----------GFNRGGGGGGFN---RGGSSNHFRGGGGGGGGGNFRGGGRGGFGR 51
          GGGRG          G + GG GGG +    GG+ + F GG GGG GG + GG  GGFG 
Sbjct: 24 GGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGGLGGGFG- 82

Query: 52 GGGRGGF 58
          GG  GGF
Sbjct: 83 GGFAGGF 89



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 28/59 (47%), Positives = 30/59 (50%), Gaps = 14/59 (23%)

Query: 170 GGGRGGRGGGRG-------------GGGRGGGRGGGFRGGRGGG-GGGFRGGRGGGFRG 214
           GGG    GGGRG              GG GGG   GF GG G G GGG+ GG GGG+ G
Sbjct: 17  GGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGG 75



 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 25/49 (51%), Positives = 25/49 (51%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           G   G G GG  GG  GGG GGG GGGF GG  GG   F    GG   G
Sbjct: 54  GGGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDGGLLTG 102



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 16/60 (26%)

Query: 170 GGGRGGRGGGRGGGGRG----------GGRGGGFRGG-----RGGGGGGFRGGRGGGFRG 214
           GGG GG G  + GGGRG          GG  GG+ GG      GG G GF GG GGG  G
Sbjct: 13  GGGFGG-GSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGG 71



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 21/34 (61%), Positives = 21/34 (61%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGG 196
           G  G   GGG GG  GG  GGG GGG GGGF GG
Sbjct: 55  GGAGSGFGGGYGGGLGGGYGGGLGGGFGGGFAGG 88



 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 5   GGGRGGFNRG-------GGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF-GRGGGRG 56
           GG  GG+  G       G G GF  GG      GG GGG GG F GG  GGF   G   G
Sbjct: 39  GGSAGGYGGGVSCGFGGGAGSGFG-GGYGGGLGGGYGGGLGGGFGGGFAGGFVDFGACDG 97

Query: 57  GFNKGQDQ 64
           G   G ++
Sbjct: 98  GLLTGNEK 105



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-GGRGGFGRGGGRGG 57
          S+ GG  GG  + GGG G +   +     G  GG GGG   G GG  G G GGG GG
Sbjct: 11 SYGGGFGGGSCQLGGGRGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGG 67



 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 25 SSNHFRGGGGGGGGGNFRGGGRG------GFGRGGGRGGFNKGQDQG 65
          SS+   GGG GGG     GGGRG       F  GG  GG+  G   G
Sbjct: 7  SSSASYGGGFGGGSCQL-GGGRGVSTCSTRFVSGGSAGGYGGGVSCG 52


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 36/80 (45%), Positives = 42/80 (52%), Gaps = 25/80 (31%)

Query: 3   FRGGGRGGFNR-GGGGGGFNRGGS------------SNH------FRGGGGGGGGGNFRG 43
           + GGG GG+N  GGGGGG + GGS            S H       + GGGGGGGG+  G
Sbjct: 223 YGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWG 282

Query: 44  GG------RGGFGRGGGRGG 57
           G       RGG+G GGG GG
Sbjct: 283 GRSNSGPYRGGYGGGGGYGG 302



 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 21/132 (15%)

Query: 104 LENKEQIGKV-------DEIFGQLRDFYFSVKLSENMKASSFKKLQKFYIDPYKLLPLQR 156
           +E+  Q G V       D+  G+ R F F     +N  A+    + KF+      + +++
Sbjct: 115 IEHFSQFGTVEKAEIIADKQSGKKRGFGFVY--FQNHDAADKAAVVKFHPIQGHRVEVKK 172

Query: 157 FLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGR---------GGGFR--GGRGGGGGGFR 205
            +P+     G   GG R  RGG RGG GRGGGR         GGG+   GG GGGGGG  
Sbjct: 173 AVPKEDIYSGGGGGGSRSSRGG-RGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGY 231

Query: 206 GGRGGGFRGRGH 217
              GGG  G  +
Sbjct: 232 NAYGGGGGGSSY 243



 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 31/63 (49%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 163 GEKGPPRGGGR-------GGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGR--GGGFR 213
           G  G  RGGGR       GG GG    GG GGG GGG+    GGGGG   GG   G GF 
Sbjct: 194 GRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFG 253

Query: 214 GRG 216
           G G
Sbjct: 254 GFG 256



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 33/68 (48%), Positives = 34/68 (50%), Gaps = 20/68 (29%)

Query: 6   GGRGGFNRGGG----------GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG-- 53
           GGRGG  RGGG          GGG+N  G       GGGGGGG N  GGG GG   GG  
Sbjct: 193 GGRGGRGRGGGRDQNGLSKGGGGGYNSYGGY-----GGGGGGGYNAYGGGGGGSSYGGSD 247

Query: 54  ---GRGGF 58
              G GGF
Sbjct: 248 YGNGFGGF 255



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 36/90 (40%), Positives = 43/90 (47%), Gaps = 27/90 (30%)

Query: 4   RGGGR--GGFNRGGGGG-----GFNRGGSSNHFRGGGGGGG---GGNFRGGGRGGFGR-- 51
           RGGGR   G ++GGGGG     G+  GG   +   GGGGGG   GG+  G G GGFG   
Sbjct: 200 RGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYS 259

Query: 52  -------------GGGRGGFNKG--QDQGP 66
                        GGG GG + G   + GP
Sbjct: 260 QHQSSYGPMKSGGGGGGGGSSWGGRSNSGP 289



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 3   FRGGGRGGF--NRGGGGGGFNRGGSSNHFRGGGGGGGG---GNFRGGGRGGFGRGGGRGG 57
           + GGG GG   +RGG GG    GG   +    GGGGG    G + GGG GG+   GG GG
Sbjct: 180 YSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGG 239

Query: 58  FNK--GQDQG 65
            +   G D G
Sbjct: 240 GSSYGGSDYG 249



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGG 202
           GP + GG GG GGG   GGR     G +RGG GGGGG
Sbjct: 266 GPMKSGGGGG-GGGSSWGGRSNS--GPYRGGYGGGGG 299



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 31/78 (39%), Positives = 32/78 (41%), Gaps = 24/78 (30%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGG---GRG-GGF--------------RGGRGGGGGGF 204
           G  G   GGG    GGG GG   GG   G G GGF               GG GGGGG  
Sbjct: 221 GGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSS 280

Query: 205 RGGRG------GGFRGRG 216
            GGR       GG+ G G
Sbjct: 281 WGGRSNSGPYRGGYGGGG 298



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 23/71 (32%)

Query: 164 EKGPPRGGGRG----GRGGGRGGGG---RGGGRGGGFRGGR--GGGGGGF---------- 204
           + G  +GGG G    G  GG GGGG    GGG GG   GG   G G GGF          
Sbjct: 206 QNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSY 265

Query: 205 ----RGGRGGG 211
                GG GGG
Sbjct: 266 GPMKSGGGGGG 276



 Score = 35.4 bits (80), Expect = 0.038
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 4/31 (12%)

Query: 14  GGGGGGFNRGGSSNH--FRGG--GGGGGGGN 40
           GGGGGG + GG SN   +RGG  GGGG GG+
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGGGYGGS 303


>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform d [Homo sapiens]
          Length = 756

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 24/89 (26%)

Query: 3   FRGGGRGGFNRGGGGGGFNR-------GGSSNHFRG-GGGGGGGGNFRGG----GRGGFG 50
           F   G GGF   GGGGGF R       GG+   F+  GGG GGGGN+RGG    G GG+ 
Sbjct: 509 FDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYS 568

Query: 51  RG------------GGRGGFNKGQDQGPP 67
           +               RG +N+   Q PP
Sbjct: 569 QNRWGNNNRDNNNSNNRGSYNRAPQQQPP 597



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/65 (49%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGG-------GRGGGRGGGF--RGGRGGGGGGFRGG---- 207
           PP EK     GG G RG G GGG       G  GG  GGF  RGG  GGGG +RGG    
Sbjct: 503 PPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRS 562

Query: 208 RGGGF 212
            GGG+
Sbjct: 563 GGGGY 567



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 36/85 (42%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 145 YIDPYKLLPLQRF----LPRPPGEKGPPRGGGRGGRGGGRGGGG-RGGGRGGGF-----R 194
           ++D    + LQR     L R   E+G   G     R   RGGGG RG G GGGF     R
Sbjct: 473 FLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENR 532

Query: 195 GGRGGGGGGFR---GGRGGGFRGRG 216
           G  GG  GGF+   GG GGG   RG
Sbjct: 533 GPPGGNRGGFQNRGGGSGGGGNYRG 557



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 163 GEKGPPRGGG------RGGRGGGRGG-GGRGGGRGGG--FRGG-RGGGGGGFRGGRGG 210
           G +G   GGG      RG  GG RGG   RGGG GGG  +RGG    GGGG+   R G
Sbjct: 516 GFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWG 573



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199
           P G +G  +  G G  GGG   GG     GGG+   R G
Sbjct: 535 PGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWG 573


>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
           isoform a [Homo sapiens]
          Length = 856

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 24/89 (26%)

Query: 3   FRGGGRGGFNRGGGGGGFNR-------GGSSNHFRG-GGGGGGGGNFRGG----GRGGFG 50
           F   G GGF   GGGGGF R       GG+   F+  GGG GGGGN+RGG    G GG+ 
Sbjct: 609 FDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYS 668

Query: 51  RG------------GGRGGFNKGQDQGPP 67
           +               RG +N+   Q PP
Sbjct: 669 QNRWGNNNRDNNNSNNRGSYNRAPQQQPP 697



 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/65 (49%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGG-------GRGGGRGGGF--RGGRGGGGGGFRGG---- 207
           PP EK     GG G RG G GGG       G  GG  GGF  RGG  GGGG +RGG    
Sbjct: 603 PPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRS 662

Query: 208 RGGGF 212
            GGG+
Sbjct: 663 GGGGY 667



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 36/85 (42%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 145 YIDPYKLLPLQRF----LPRPPGEKGPPRGGGRGGRGGGRGGGG-RGGGRGGGF-----R 194
           ++D    + LQR     L R   E+G   G     R   RGGGG RG G GGGF     R
Sbjct: 573 FLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENR 632

Query: 195 GGRGGGGGGFR---GGRGGGFRGRG 216
           G  GG  GGF+   GG GGG   RG
Sbjct: 633 GPPGGNRGGFQNRGGGSGGGGNYRG 657



 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 163 GEKGPPRGGG------RGGRGGGRGG-GGRGGGRGGG--FRGG-RGGGGGGFRGGRGG 210
           G +G   GGG      RG  GG RGG   RGGG GGG  +RGG    GGGG+   R G
Sbjct: 616 GFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWG 673



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199
           P G +G  +  G G  GGG   GG     GGG+   R G
Sbjct: 635 PGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWG 673


>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
          Length = 518

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 7/61 (11%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRG----GGFRGGRGGGGGGFRGG--RGGGFRGRG 216
           G  G  +GGGRGGR GG   GGRGGGRG    GG+  G  GGGGG++ G  R  GF+  G
Sbjct: 350 GRGGHEQGGGRGGR-GGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGG 408

Query: 217 H 217
           +
Sbjct: 409 Y 409



 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 36/66 (54%), Positives = 38/66 (57%), Gaps = 15/66 (22%)

Query: 161 PPGEK---GPPRGGGRGGRGGGRGG------GGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           PP +K   GP +    GGRGGGRGG      GGRGG   GG RGGRGG      GGRGGG
Sbjct: 320 PPWQKRQDGPQQQ--TGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYD---HGGRGGG 374

Query: 212 FRGRGH 217
            RG  H
Sbjct: 375 -RGNKH 379



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 4   RGGGRGGFNRGGGGGGFNRGGSSNHFRGG---GGGGGGGNFRGGG--RGGFGRGGGRGGF 58
           +GGGRGG  RGG   G   GG  N  +GG   GG GGGG ++ GG    GF  GG  GG 
Sbjct: 356 QGGGRGG--RGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGH 413

Query: 59  NKGQDQG 65
           + G  QG
Sbjct: 414 SSGGYQG 420



 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 4   RGGGRGGFNR---GGGGG---GFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           RGGGRGG+     GG GG   G  RGG   +  GG GGG G   +GG   G G GGG GG
Sbjct: 336 RGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDG-GSGGG-GG 393

Query: 58  FNKG 61
           +  G
Sbjct: 394 YQDG 397



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 20/82 (24%)

Query: 4   RGGGRGGFNRG-------GGGGGFNRGG-SSNHFRGGG--GGGGGGNFRGGGRGGFG--- 50
           RGGGRG  ++G       GGGGG+  GG   + F+ GG  GG   G ++GGG GGF    
Sbjct: 371 RGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSS 430

Query: 51  -------RGGGRGGFNKGQDQG 65
                  +GGG    N+ QD G
Sbjct: 431 SYTGSGYQGGGYQQDNRYQDGG 452



 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 34/73 (46%), Positives = 37/73 (50%), Gaps = 26/73 (35%)

Query: 166 GPPRGGGRGG-------RGGGRGGGG---------------RGGGRGGGFRGGRGGGGGG 203
           G  +GGG GG        G G  GGG               RGGGRGG  RGGRGG GG 
Sbjct: 416 GGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRGG--RGGRGGRGG- 472

Query: 204 FRGGRGGGFRGRG 216
            R G+GGG+ GRG
Sbjct: 473 -RAGQGGGWGGRG 484



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 3   FRGGGRGGFNRGGG--GGGFNRGG--SSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGF 58
           ++GGG GGF       G G+  GG    N ++ GG  G     RGGGRGG G  GGRGG 
Sbjct: 418 YQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGD----RGGGRGGRGGRGGRGG- 472

Query: 59  NKGQDQG 65
             GQ  G
Sbjct: 473 RAGQGGG 479



 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 28/47 (59%), Positives = 30/47 (63%), Gaps = 7/47 (14%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG----RGGGF 212
           GG  G RGGGRGG G  GGRGG  R G+GGG GG RG     +GG F
Sbjct: 451 GGHHGDRGGGRGGRGGRGGRGG--RAGQGGGWGG-RGSQNYHQGGQF 494



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 14  GGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGF---GRGGGRGGFNKG 61
           GG GGG  RGG  +   GG GG   G  R GGRGG+   GRGGGRG  ++G
Sbjct: 334 GGRGGG--RGGYEHSSYGGRGGHEQGGGR-GGRGGYDHGGRGGGRGNKHQG 381



 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 32/63 (50%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 161 PPGEKGPP---RGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG-GGGGFRGGRGG---GFR 213
           PP  + PP   R  G   + GGRGGG RGG     + GGRGG   GG RGGRGG   G R
Sbjct: 314 PPPPEMPPWQKRQDGPQQQTGGRGGG-RGGYEHSSY-GGRGGHEQGGGRGGRGGYDHGGR 371

Query: 214 GRG 216
           G G
Sbjct: 372 GGG 374



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGG-GFRGGRGGG-------GGGFRGGRGGGFRG 214
           G++G  RGG RGGRGG  G  G+GGG GG G +    GG        GG++    G  +G
Sbjct: 455 GDRGGGRGG-RGGRGGRGGRAGQGGGWGGRGSQNYHQGGQFEQHFQHGGYQYNHSGFGQG 513

Query: 215 R 215
           R
Sbjct: 514 R 514



 Score = 37.4 bits (85), Expect = 0.010
 Identities = 21/48 (43%), Positives = 24/48 (50%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG 50
           ++GGG    NR   GG     G     RGG GG GG   +GGG GG G
Sbjct: 437 YQGGGYQQDNRYQDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGWGGRG 484



 Score = 37.4 bits (85), Expect = 0.010
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGG--NFRGGGR--GGFGRGG---GR 55
           ++ GG  G   GG GG   RGG       GGG GG G  N+  GG+    F  GG     
Sbjct: 448 YQDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGWGGRGSQNYHQGGQFEQHFQHGGYQYNH 507

Query: 56  GGFNKGQ 62
            GF +G+
Sbjct: 508 SGFGQGR 514



 Score = 36.2 bits (82), Expect = 0.022
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGG--RGGGGGGFRGG---RGGGFRGRGH 217
           G   GGG    GG R  G + GG  GG   G  +GGG GGF+      G G++G G+
Sbjct: 386 GGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGY 442



 Score = 35.8 bits (81), Expect = 0.029
 Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 24  GSSNHFRGGGGGGGGGNFRG-GGRGGFGRGGGRGGFNKGQDQG 65
           G      G GGG GG      GGRGG  +GGGRGG   G D G
Sbjct: 328 GPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGG-RGGYDHG 369


>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
           sapiens]
          Length = 419

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 32/73 (43%), Positives = 34/73 (46%)

Query: 7   GRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGP 66
           G GG     GGGG + G       GGGGG GGG   GGG G  G GGG GG   G    P
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHP 189

Query: 67  PERVVLLGEFLHP 79
              +  LG   HP
Sbjct: 190 HPHMHSLGHLSHP 202



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 31/54 (57%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 163 GEKGPPRGGGR-----GGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           G  G   GGG      GG GG  GGGG GGG GGG  GG GGGGGG  GG  GG
Sbjct: 132 GGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGG 185



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/45 (62%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
           GG   G GGG G GG GGG GGG  GG GGG GG  GG GGG  G
Sbjct: 141 GGAHDGPGGGGGPGG-GGGPGGGPGGGGGGGPGGGGGGPGGGLLG 184



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 28/49 (57%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           G  G     G GG   G GGGG  GG GGG  GG GGGGGG  GG GGG
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGG-GGGPGGGPGGGGGGGPGGGGGG 177



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 25/45 (55%), Positives = 25/45 (55%)

Query: 172 GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           G GG G   GGGG   G GGG   G GGG GG  GG GGG  G G
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGG 174



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 25/40 (62%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGG 200
           P G  GP  GGG GG  GG GGGG GGG GGG  GG  GG
Sbjct: 147 PGGGGGPGGGGGPGGGPGGGGGGGPGGG-GGGPGGGLLGG 185


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 32/68 (47%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 162 PGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGG-------------GGGFRGGR 208
           PG   P  GGG GG GGG GG G GGG GG   GG G G             GGG  GG 
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 209 GGGFRGRG 216
           GG   G G
Sbjct: 301 GGSSAGYG 308



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 31/72 (43%), Positives = 33/72 (45%), Gaps = 18/72 (25%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRG-------------GF 49
           + G  R G   GGGGGG   GGS     GGGGGGGG    G G G             G 
Sbjct: 240 YPGYSRPGAGGGGGGGGGGGGGS-----GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294

Query: 50  GRGGGRGGFNKG 61
           G GGG GG + G
Sbjct: 295 GGGGGYGGSSAG 306



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/58 (46%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           P     +G P        G  R G G GGG GGG  GG GGGGGG  GG G G  G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGG--GGAGAGGAGAG 279



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/64 (43%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRG-----------GRGGGGGGFRGGR 208
           RP    G   GGG GG  GG GGGG G G GG   G             GGGGGG  GG 
Sbjct: 245 RPGAGGGGGGGGGGGGGSGG-GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303

Query: 209 GGGF 212
             G+
Sbjct: 304 SAGY 307



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 5   GGGRGGFNRGGGGGGFNRGGS-------SNHFRGGGGGGGGGNFRGGGRGGFG------- 50
           GGG GG   GGGGGG   GG+       +        GGGGG   GG   G+G       
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315

Query: 51  RGGG 54
           +GGG
Sbjct: 316 QGGG 319



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 24/67 (35%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-------------GGRGGFGR 51
           GGG GG   G GGGG           GGGG G GG   G             GG GG G 
Sbjct: 252 GGGGGGGGGGSGGGG-----------GGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 52  GGGRGGF 58
           GG   G+
Sbjct: 301 GGSSAGY 307



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 27  NHFRG---GGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           NH+ G    G GGGGG   GGG GG G GGG GG   G
Sbjct: 238 NHYPGYSRPGAGGGGGG-GGGGGGGSGGGGGGGGAGAG 274



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 36/109 (33%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFR-----------GGGGGGGGGNFRGGG-------R 46
           GGG G    GGGGG    G  +               GGGGGG GG+  G G       +
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQ 316

Query: 47  GG---FGRGGG-------------RGGFNK--GQDQGPPERVVLLGEFL 77
           GG    G GGG              GGF +  GQ+Q P      L + L
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLL 365



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 30/97 (30%), Positives = 32/97 (32%), Gaps = 46/97 (47%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRG---------------------GGRGGGFRG------ 195
           G  G   GGG GG GGG GGGG G                     GG GGG+ G      
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308

Query: 196 --------------GRGGGGG-----GFRGGRGGGFR 213
                         G GGGG         G   GGF+
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQ 345


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 32/68 (47%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 162 PGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGG-------------GGGFRGGR 208
           PG   P  GGG GG GGG GG G GGG GG   GG G G             GGG  GG 
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 209 GGGFRGRG 216
           GG   G G
Sbjct: 301 GGSSAGYG 308



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 31/72 (43%), Positives = 33/72 (45%), Gaps = 18/72 (25%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRG-------------GF 49
           + G  R G   GGGGGG   GGS     GGGGGGGG    G G G             G 
Sbjct: 240 YPGYSRPGAGGGGGGGGGGGGGS-----GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294

Query: 50  GRGGGRGGFNKG 61
           G GGG GG + G
Sbjct: 295 GGGGGYGGSSAG 306



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/58 (46%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           P     +G P        G  R G G GGG GGG  GG GGGGGG  GG G G  G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGG--GGAGAGGAGAG 279



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/64 (43%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRG-----------GRGGGGGGFRGGR 208
           RP    G   GGG GG  GG GGGG G G GG   G             GGGGGG  GG 
Sbjct: 245 RPGAGGGGGGGGGGGGGSGG-GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303

Query: 209 GGGF 212
             G+
Sbjct: 304 SAGY 307



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 5   GGGRGGFNRGGGGGGFNRGGS-------SNHFRGGGGGGGGGNFRGGGRGGFG------- 50
           GGG GG   GGGGGG   GG+       +        GGGGG   GG   G+G       
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315

Query: 51  RGGG 54
           +GGG
Sbjct: 316 QGGG 319



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 24/67 (35%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-------------GGRGGFGR 51
           GGG GG   G GGGG           GGGG G GG   G             GG GG G 
Sbjct: 252 GGGGGGGGGGSGGGG-----------GGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 52  GGGRGGF 58
           GG   G+
Sbjct: 301 GGSSAGY 307



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 27  NHFRG---GGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           NH+ G    G GGGGG   GGG GG G GGG GG   G
Sbjct: 238 NHYPGYSRPGAGGGGGG-GGGGGGGSGGGGGGGGAGAG 274



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 36/109 (33%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFR-----------GGGGGGGGGNFRGGG-------R 46
           GGG G    GGGGG    G  +               GGGGGG GG+  G G       +
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQ 316

Query: 47  GG---FGRGGG-------------RGGFNK--GQDQGPPERVVLLGEFL 77
           GG    G GGG              GGF +  GQ+Q P      L + L
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLL 365



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 30/97 (30%), Positives = 32/97 (32%), Gaps = 46/97 (47%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRG---------------------GGRGGGFRG------ 195
           G  G   GGG GG GGG GGGG G                     GG GGG+ G      
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308

Query: 196 --------------GRGGGGG-----GFRGGRGGGFR 213
                         G GGGG         G   GGF+
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQ 345


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 32/68 (47%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 162 PGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGG-------------GGGFRGGR 208
           PG   P  GGG GG GGG GG G GGG GG   GG G G             GGG  GG 
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 209 GGGFRGRG 216
           GG   G G
Sbjct: 301 GGSSAGYG 308



 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 31/72 (43%), Positives = 33/72 (45%), Gaps = 18/72 (25%)

Query: 3   FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRG-------------GF 49
           + G  R G   GGGGGG   GGS     GGGGGGGG    G G G             G 
Sbjct: 240 YPGYSRPGAGGGGGGGGGGGGGS-----GGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGG 294

Query: 50  GRGGGRGGFNKG 61
           G GGG GG + G
Sbjct: 295 GGGGGYGGSSAG 306



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/58 (46%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 159 PRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
           P     +G P        G  R G G GGG GGG  GG GGGGGG  GG G G  G G
Sbjct: 224 PLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGG--GGAGAGGAGAG 279



 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/64 (43%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 160 RPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRG-----------GRGGGGGGFRGGR 208
           RP    G   GGG GG  GG GGGG G G GG   G             GGGGGG  GG 
Sbjct: 245 RPGAGGGGGGGGGGGGGSGG-GGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGS 303

Query: 209 GGGF 212
             G+
Sbjct: 304 SAGY 307



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 5   GGGRGGFNRGGGGGGFNRGGS-------SNHFRGGGGGGGGGNFRGGGRGGFG------- 50
           GGG GG   GGGGGG   GG+       +        GGGGG   GG   G+G       
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315

Query: 51  RGGG 54
           +GGG
Sbjct: 316 QGGG 319



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 24/67 (35%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG-------------GGRGGFGR 51
           GGG GG   G GGGG           GGGG G GG   G             GG GG G 
Sbjct: 252 GGGGGGGGGGSGGGG-----------GGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGY 300

Query: 52  GGGRGGF 58
           GG   G+
Sbjct: 301 GGSSAGY 307



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 27  NHFRG---GGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           NH+ G    G GGGGG   GGG GG G GGG GG   G
Sbjct: 238 NHYPGYSRPGAGGGGGG-GGGGGGGSGGGGGGGGAGAG 274



 Score = 36.6 bits (83), Expect = 0.017
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 36/109 (33%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFR-----------GGGGGGGGGNFRGGG-------R 46
           GGG G    GGGGG    G  +               GGGGGG GG+  G G       +
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQ 316

Query: 47  GG---FGRGGG-------------RGGFNK--GQDQGPPERVVLLGEFL 77
           GG    G GGG              GGF +  GQ+Q P      L + L
Sbjct: 317 GGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLL 365



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 30/97 (30%), Positives = 32/97 (32%), Gaps = 46/97 (47%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRG---------------------GGRGGGFRG------ 195
           G  G   GGG GG GGG GGGG G                     GG GGG+ G      
Sbjct: 249 GGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYG 308

Query: 196 --------------GRGGGGG-----GFRGGRGGGFR 213
                         G GGGG         G   GGF+
Sbjct: 309 VLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQ 345


>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
           sapiens]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 33/61 (54%), Positives = 33/61 (54%), Gaps = 10/61 (16%)

Query: 166 GPPRGGG--RGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGG--------RGGGFRGR 215
           GP  GGG  RGG G    GGG GGG GGG RG R G GGG RGG        R    RGR
Sbjct: 156 GPGAGGGAERGGSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGPRAQAVRRRLSALRGR 215

Query: 216 G 216
           G
Sbjct: 216 G 216



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 29/49 (59%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 15  GGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGG-FGRGGGRGGFNKGQ 62
           G GGG  RGGS     GGGGGGGGG   GGGRG   GRGGG  G  + Q
Sbjct: 158 GAGGGAERGGSGRSSAGGGGGGGGG---GGGRGSRRGRGGGERGGPRAQ 203



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/51 (50%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGR 55
           G G GG    GG G  + GG      GGGGGGGGG     GRGG  RGG R
Sbjct: 156 GPGAGGGAERGGSGRSSAGGG-----GGGGGGGGGRGSRRGRGGGERGGPR 201



 Score = 32.3 bits (72), Expect = 0.32
 Identities = 15/31 (48%), Positives = 16/31 (51%)

Query: 32  GGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQ 62
           G G GGG    G GR   G GGG GG   G+
Sbjct: 156 GPGAGGGAERGGSGRSSAGGGGGGGGGGGGR 186



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)

Query: 34  GGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQG 65
           G G GG    GG G    GGG GG   G  +G
Sbjct: 156 GPGAGGGAERGGSGRSSAGGGGGGGGGGGGRG 187


>gi|109148552 keratin 3 [Homo sapiens]
          Length = 628

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 31/55 (56%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFN 59
           GGG GG   GG GGGF+ GG S    G GGGGG G   GGG  GF  G G G  +
Sbjct: 539 GGGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGGIGGGFGGGSSGFSGGSGFGSIS 593



 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 32/51 (62%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 170 GGGR-GGRGGGRGGGGRGGGRGGGFRGGRGGG-GGGFRGGRG--GGFRGRG 216
           GG R GG GGGR      GG GGGF  G GGG GGGF GGRG  GGF G G
Sbjct: 73  GGSRAGGFGGGRSSCAFAGGYGGGFGSGYGGGFGGGFGGGRGMGGGFGGAG 123



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 30/49 (61%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 170 GGGRGGRGGGRGGG-GRGGGRGGGF-RGGRGGGGGGFRGGRGGGFRGRG 216
           GG  GG GGG GGG   GGG G GF RGG GG GGGF GG  G   G G
Sbjct: 540 GGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGGIGGGFGGGSSGFSGGSG 588



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 31/66 (46%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 2   SFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
           +F GG  GGF   G GGGF  G       GGG GG GG    GG GG G  GG GGF   
Sbjct: 88  AFAGGYGGGFG-SGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGS 146

Query: 62  QDQGPP 67
              G P
Sbjct: 147 GGFGGP 152



 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 35/63 (55%), Positives = 36/63 (57%), Gaps = 10/63 (15%)

Query: 163 GEKGPPRGGGR------GGRGGGRGGGGRGGGRGGGFRGGRG-GGGGGFRGGRG--GGFR 213
           G +    GGGR      GG GGG G G  GGG GGGF GGRG GGG G  GG G  GGF 
Sbjct: 74  GSRAGGFGGGRSSCAFAGGYGGGFGSG-YGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFG 132

Query: 214 GRG 216
           G G
Sbjct: 133 GAG 135



 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 12/110 (10%)

Query: 114 DEIFGQLRDFY--FSVKLSENMKASSFKKLQKFYIDPYKLLPLQRFLPRPPGEKGPPRGG 171
           D++   LRD+    +VKL+ +++ ++++KL +   + Y++                    
Sbjct: 476 DDLARLLRDYQELMNVKLALDVEIATYRKLLEG--EEYRMSGECPSAVSISVVSSSTTSA 533

Query: 172 GRGGRGGGRGGGGRGGGRGGGFRGGRG-------GGGGGFRGGRGGGFRG 214
             GG GGG GGG  GGG GGGF  G G       GGGGG  GG GGG  G
Sbjct: 534 SAGGYGGGYGGG-MGGGLGGGFSAGGGSGSGFGRGGGGGIGGGFGGGSSG 582



 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 36/84 (42%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 3   FRGGGRGGFNRGGG-GGGFNRGGSSNHFRGGGGGGGGGNFRG-GGRGGFGRGGGRGGFNK 60
           F GG  GG   GGG GG    GG+   F G GG GG G F G GG GG G  G  GGF  
Sbjct: 105 FGGGFGGGRGMGGGFGGAGGFGGAGG-FGGAGGFGGPGGFGGSGGFGGPGSLGSPGGFGP 163

Query: 61  GQDQGPPERVVLLGEFLHPCEDDI 84
           G   G  + V +    L P   +I
Sbjct: 164 GGFPGGIQEVTINQSLLQPLNVEI 187



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 33/70 (47%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 5   GGGR-GGFNRGGG------GGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
           GG R GGF  GGG       GG+  G  S +  G GGG GGG   GGG GG G  GG GG
Sbjct: 73  GGSRAGGF--GGGRSSCAFAGGYGGGFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGG 130

Query: 58  FNKGQDQGPP 67
           F      G P
Sbjct: 131 FGGAGGFGGP 140



 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 27/51 (52%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 163 GEKGPPRGGGRGG--RGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGG 211
           G  G   GGG GG    GG  G G G G GGG  GG GGG  GF GG G G
Sbjct: 540 GGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGGIGGGFGGGSSGFSGGSGFG 590



 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 32/54 (59%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 170 GGGRG-GRGGGRGGG-GRGGGRGGGFRGGRG-GGGGGFRGGRG----GGFRGRG 216
           GGG G G GGG GGG G G G GGGF G  G GG GGF G  G    GGF G G
Sbjct: 94  GGGFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSG 147



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 28/51 (54%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRG----GRGGGFRGRG 216
           GG  GG GGGRG GG  GG GG    G  GG GGF G    G  GGF G G
Sbjct: 103 GGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPG 153



 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 31/68 (45%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 5   GGGRGGFNRGGGGG-GFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGR------GGGRGG 57
           GG  GGF+ GGG G GF RGG      GGG GGG   F GG   GFG       G   GG
Sbjct: 548 GGLGGGFSAGGGSGSGFGRGGGGGI--GGGFGGGSSGFSGG--SGFGSISGARYGVSGGG 603

Query: 58  FNKGQDQG 65
           F+   ++G
Sbjct: 604 FSSASNRG 611



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 31/61 (50%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQ 64
           GG  GG+  GGG GG   GG S    GGG G G G   GGG GG G GGG  GF+ G   
Sbjct: 536 GGYGGGY--GGGMGGGLGGGFS---AGGGSGSGFGRGGGGGIGG-GFGGGSSGFSGGSGF 589

Query: 65  G 65
           G
Sbjct: 590 G 590



 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 30/58 (51%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 5   GGGRG-GFNRGGGGG---GFNRGGSSNHFRGGGGGGG-GGNFRGGGRGGFGRGGGRGG 57
           GGG G GF RGGGGG   GF  GG S+ F GG G G   G   G   GGF     RGG
Sbjct: 557 GGGSGSGFGRGGGGGIGGGF--GGGSSGFSGGSGFGSISGARYGVSGGGFSSASNRGG 612



 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 29/57 (50%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 166 GPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGG-------GFRGGRG-GGFRG 214
           G   GGG GG GG  G GG GG  G G  GG GG GG       G  GG G GGF G
Sbjct: 112 GRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPGSLGSPGGFGPGGFPG 168



 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 26/48 (54%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 170 GGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGG-GGFRGGR----GGGF 212
           GGG G   G  GGGG GGG GGG  G  GG G G   G R    GGGF
Sbjct: 557 GGGSGSGFGRGGGGGIGGGFGGGSSGFSGGSGFGSISGARYGVSGGGF 604



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 29/72 (40%), Positives = 29/72 (40%), Gaps = 27/72 (37%)

Query: 170 GGGRGGRGGGRGGGG---------------------RGGGRGGGFRGGR------GGGGG 202
           GG  GG  G R G G                      GG R GGF GGR      GG GG
Sbjct: 36  GGAGGGAYGFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGG 95

Query: 203 GFRGGRGGGFRG 214
           GF  G GGGF G
Sbjct: 96  GFGSGYGGGFGG 107



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 33/87 (37%), Positives = 33/87 (37%), Gaps = 33/87 (37%)

Query: 5   GGGRGGFNRGGGG--------------------------GGFNRGGSSNHFRGGGGGGGG 38
           GGG  GF  G GG                          GGF  G SS  F GG GGG G
Sbjct: 39  GGGAYGFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGGFG 98

Query: 39  -------GNFRGGGRGGFGRGGGRGGF 58
                  G   GGGRG  G  GG GGF
Sbjct: 99  SGYGGGFGGGFGGGRGMGGGFGGAGGF 125



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 28/52 (53%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 170 GGGRG---GRGGGRGGGGRGGGRGGGFRGGRG--GGGGGFRG----GRGGGF 212
           GGGRG   G GG  G GG GG  G G  GG G  GG GGF G    G  GGF
Sbjct: 110 GGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPGSLGSPGGF 161



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 22/33 (66%), Positives = 23/33 (69%), Gaps = 4/33 (12%)

Query: 187 GGRGGGFRGGRGGG-GGGFR--GGRGGGFRGRG 216
           GG GGG+ GG GGG GGGF   GG G GF GRG
Sbjct: 536 GGYGGGYGGGMGGGLGGGFSAGGGSGSGF-GRG 567



 Score = 38.1 bits (87), Expect = 0.006
 Identities = 23/51 (45%), Positives = 24/51 (47%)

Query: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFR 213
           G  G    GG GG GG  G GG GG  G G  G  G  GG   GG  GG +
Sbjct: 121 GAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPGSLGSPGGFGPGGFPGGIQ 171



 Score = 35.4 bits (80), Expect = 0.038
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 25  SSNHFRGGGGGGGGGNFRGGG-RGGFGRGGGRG-GFNKGQDQG 65
           S+     GG GGG G   GGG  GGF  GGG G GF +G   G
Sbjct: 529 STTSASAGGYGGGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGG 571



 Score = 35.0 bits (79), Expect = 0.049
 Identities = 24/57 (42%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 166 GPPRGGGRGGRGG--GRGGGGRGGGRGG-------GFRGGRGGGGGGFRGGRGGGFR 213
           G   G GRGG GG  G  GGG  G  GG       G R G  GGG      RGG  +
Sbjct: 559 GSGSGFGRGGGGGIGGGFGGGSSGFSGGSGFGSISGARYGVSGGGFSSASNRGGSIK 615



 Score = 32.7 bits (73), Expect = 0.24
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 169 RGGGRGGRGGGRGGGGRGGGRGGGFR-------GGRGGGGGGFRGGRGG 210
           R   +   GG +G  GR     G  R       GG GGG  GFR G GG
Sbjct: 3   RQASKTSGGGSQGFSGRSAVVSGSSRMSCVAHSGGAGGGAYGFRSGAGG 51



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 5  GGGRGGFN-RGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFG 50
          GGG  GF+ R     G +R     H   GG GGG   FR G  GGFG
Sbjct: 10 GGGSQGFSGRSAVVSGSSRMSCVAH--SGGAGGGAYGFRSGA-GGFG 53


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.153    0.498 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,955,221
Number of Sequences: 37866
Number of extensions: 1021761
Number of successful extensions: 56275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 10077
Number of HSP's gapped (non-prelim): 21947
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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