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Search of human proteins with 150010659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150010659 hypothetical protein LOC85352 [Homo sapiens] 429 e-121
gi|39930575 shisa homolog 4 [Homo sapiens] 43 2e-04
gi|56090523 shisa homolog 2 [Homo sapiens] 42 3e-04
gi|122937450 shisa homolog 3 [Homo sapiens] 38 0.005
gi|4557329 fas ligand [Homo sapiens] 36 0.019
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.042
gi|157041215 SPR1 protein [Homo sapiens] 34 0.072
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens] 34 0.094
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 34 0.094
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 34 0.094
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 34 0.094
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 34 0.094
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 33 0.12
gi|32307177 forkhead box G1 [Homo sapiens] 33 0.12
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 33 0.16
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 33 0.16
gi|52353302 transmembrane protein 198 [Homo sapiens] 33 0.16
gi|239756902 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ... 33 0.21
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ... 33 0.21
gi|81295809 pericentrin [Homo sapiens] 33 0.21
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 33 0.21
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 33 0.21
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 33 0.21
gi|50345881 cytoplasmic polyadenylation element binding protein ... 32 0.27
gi|118402590 myosin XV [Homo sapiens] 32 0.27
gi|239754746 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|239749281 PREDICTED: hypothetical protein XP_002346979 [Homo ... 32 0.27
gi|239509062 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 32 0.27
>gi|150010659 hypothetical protein LOC85352 [Homo sapiens]
Length = 199
Score = 429 bits (1104), Expect = e-121
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MTSCGQQSLNVLAVLFSLLFSAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCC 60
MTSCGQQSLNVLAVLFSLLFSAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCC
Sbjct: 1 MTSCGQQSLNVLAVLFSLLFSAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCC 60
Query: 61 HHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYY 120
HHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYY
Sbjct: 61 HHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYY 120
Query: 121 SAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVH 180
SAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVH
Sbjct: 121 SAMNYDICKVYLARWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVH 180
Query: 181 TLRGDAHSPPLMTFQSSSA 199
TLRGDAHSPPLMTFQSSSA
Sbjct: 181 TLRGDAHSPPLMTFQSSSA 199
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 42.7 bits (99), Expect = 2e-04
Identities = 52/211 (24%), Positives = 75/211 (35%), Gaps = 32/211 (15%)
Query: 1 MTSCGQQSLNVLAVLFSLLFSAVLSAHFRVCEPYTDHKGRYHFGFHCPRLSDNKTFILCC 60
M G + L + L+ A L C Y D G +H GF+C + F CC
Sbjct: 1 MPPAGLRRAAPLTAIALLVLGAPLVLAGEDCLWYLDRNGSWHPGFNC------EFFTFCC 54
Query: 61 HHNNTVFKYCCNETEFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYY 120
+YCC + LT + A I G ++L + ++
Sbjct: 55 --GTCYHRYCCRD----------LTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVAT 102
Query: 121 SAMNY--DICKVYLARWGIQGRWMKQDPRRWGNPARA-------PRPGQRAPQP---QPP 168
+ + C +Y R +Q + Q+ G P + P+ G PQP PP
Sbjct: 103 TICCFLCSCCYLYRRRQQLQSPFEGQEIPMTGIPVQPVYPYPQDPKAGPAPPQPGFMYPP 162
Query: 169 PGPLPQAP--QAVHTLRGDAHSPPLMTFQSS 197
GP PQ P A + A PP M Q S
Sbjct: 163 SGPAPQYPLYPAGPPVYNPAAPPPYMPPQPS 193
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 13 AVLFSLLFSAVLSAHFRV----CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFK 68
A L LL +A+L+A R C + D +G + GF CP D +CC + +
Sbjct: 16 ASLLQLLLAALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICC--GSCALR 73
Query: 69 YCCNETE 75
YCC+ E
Sbjct: 74 YCCSSAE 80
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 38.1 bits (87), Expect = 0.005
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 31 CEPYTDHKGRYHFGFHCPRLSDNKTFILCCHHNNTVFKYCC 71
C + D +G YH GF CP D +CC + +YCC
Sbjct: 28 CHGWVDVQGNYHEGFQCPEDFDTLDATICC--GSCALRYCC 66
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 36.2 bits (82), Expect = 0.019
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 152 PARAPR-PGQRAPQPQPPPGPLPQAP 176
P PR PGQR P P PPP PLP P
Sbjct: 33 PTSVPRRPGQRRPPPPPPPPPLPPPP 58
Score = 29.6 bits (65), Expect = 1.8
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 146 PRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPL 191
PRR G P P P PPP PLP P RG+ HS L
Sbjct: 37 PRRPGQRRPPPPPPPPPLPPPPPPPPLPPLPLPPLKKRGN-HSTGL 81
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 35.0 bits (79), Expect = 0.042
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 145 DPRRWGNPARAPRPGQRAPQPQPPPGPLP 173
D R G+P AP P Q+ P P PPP P P
Sbjct: 587 DDDRGGSPPPAPTPPQQPPPPPPPPPPPP 615
>gi|157041215 SPR1 protein [Homo sapiens]
Length = 136
Score = 34.3 bits (77), Expect = 0.072
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 139 GRWMKQDPRRWGNPARAPRPGQRAPQ-PQPPPGPLPQAPQ 177
G W+ + PR +P + PRP P PQPP P P AP+
Sbjct: 80 GVWLPEPPRT--DPPQPPRPDDPWPAGPQPPENPWPPAPE 117
>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
Length = 949
Score = 33.9 bits (76), Expect = 0.094
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 150 GNPARAPRPGQRAPQPQ----PPPGPLPQAPQA 178
G P RAP P + P P+ PPGPLP AP +
Sbjct: 431 GPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNS 463
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 33.9 bits (76), Expect = 0.094
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 150 GNPARAPRPGQRAPQPQ----PPPGPLPQAPQA 178
G P RAP P + P P+ PPGPLP AP +
Sbjct: 636 GPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNS 668
Score = 30.8 bits (68), Expect = 0.79
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 150 GNPARAPRPGQRAPQPQPPPGP 171
G+ +PRP QR P P PPP P
Sbjct: 1168 GSVISSPRPHQRMPPPPPPPPP 1189
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 33.9 bits (76), Expect = 0.094
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 146 PRRWGNPARAPRPGQRAPQPQPP-PGPLPQAPQAVHTLRGDAHSP 189
PRR G+P RA RP P P PP P P +P A RG SP
Sbjct: 85 PRRRGSPERA-RPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASP 128
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 33.9 bits (76), Expect = 0.094
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 146 PRRWGNPARAPRPGQRAPQPQPP-PGPLPQAPQAVHTLRGDAHSP 189
PRR G+P RA RP P P PP P P +P A RG SP
Sbjct: 85 PRRRGSPERA-RPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASP 128
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 33.9 bits (76), Expect = 0.094
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 143 KQDPRRWGNPARAPRPGQRAPQPQPPPGPL--PQAPQAVHTLRGDAHSPPLMTFQSSS 198
K D + G+PA+ P P P+PQ P G + P + R A L + + SS
Sbjct: 23 KSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSS 80
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 33.5 bits (75), Expect = 0.12
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 152 PARAPRPGQRAPQPQPPPGPLPQA-PQAVHTLRGDAHSPPL 191
P R P P P PPP PLP A PQ T A +PP+
Sbjct: 2031 PLRPQTPEPPPPPPPPPPPPLPAAPPQPASTPAIPASAPPI 2071
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 33.5 bits (75), Expect = 0.12
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 152 PARAPRPGQRAPQPQPPPGPLPQAPQ 177
PA P P + QP PPP P PQ PQ
Sbjct: 61 PAPQPPPPPQQQQPPPPPPPAPQPPQ 86
Score = 28.9 bits (63), Expect = 3.0
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 152 PARAPRPGQRAPQPQPPPGPLPQAPQAVHT 181
P AP+P Q QPPP P P APQ T
Sbjct: 59 PPPAPQPPPPPQQQQPPPPP-PPAPQPPQT 87
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 33.1 bits (74), Expect = 0.16
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 10/38 (26%)
Query: 152 PARAPRPGQRAP------QPQ-PPPGPLPQ---APQAV 179
PA +P+PG R P +PQ PPPGP P AP+AV
Sbjct: 906 PAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAV 943
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 33.1 bits (74), Expect = 0.16
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 144 QDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPP 190
Q P G P P PG QP PPP PQ P G H PP
Sbjct: 258 QRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPP-PPQGGRPHRPP 303
Score = 32.0 bits (71), Expect = 0.36
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 146 PRRWGNPARAPRPGQRAPQPQPPPGPLPQAP 176
P+ P R P PG+ PQ PPPG PQ P
Sbjct: 251 PQEGNKPQRPPPPGR--PQGPPPPGGNPQQP 279
Score = 27.3 bits (59), Expect = 8.8
Identities = 16/52 (30%), Positives = 18/52 (34%)
Query: 139 GRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPP 190
G + P R G P P G PQ PP PQ P + PP
Sbjct: 212 GNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPP 263
>gi|52353302 transmembrane protein 198 [Homo sapiens]
Length = 360
Score = 33.1 bits (74), Expect = 0.16
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 143 KQDPRRWGNPARAPRPGQRA-PQPQPPPGPLPQAPQAVHTLRGDAHSP 189
+++ RR P RAP G RA P+P PP + P + GD SP
Sbjct: 268 RKEKRRKKRPPRAPLRGPRAPPRPGPPDPAYRRRPVPIKRFNGDVLSP 315
>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 150 GNPARAPRPGQRA---PQPQPPPGPLPQAPQAVHTLR 183
G ARAPR RA P P PPP P P AP+ V + R
Sbjct: 64 GGGARAPRTFSRARARPAPAPPPSPAP-APRRVESSR 99
>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 150 GNPARAPRPGQRA---PQPQPPPGPLPQAPQAVHTLR 183
G ARAPR RA P P PPP P P AP+ V + R
Sbjct: 64 GGGARAPRTFSRARARPAPAPPPSPAP-APRRVESSR 99
>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
sapiens]
Length = 121
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 150 GNPARAPRPGQRA---PQPQPPPGPLPQAPQAVHTLR 183
G ARAPR RA P P PPP P P AP+ V + R
Sbjct: 64 GGGARAPRTFSRARARPAPAPPPSPAP-APRRVESSR 99
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 32.7 bits (73), Expect = 0.21
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 140 RWMKQDPRRWGNPARAPRPGQRAPQPQPPP 169
+W + D + +APRPG RA QPQ PP
Sbjct: 3215 KWQEVDRKGALAQGKAPRPGPRARQPQSPP 3244
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 143 KQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPP 190
+Q P++ P P P P P PP P P P + H SPP
Sbjct: 450 QQQPQQQLPPPPPPLPHPPPPLPPPPQQPHPPLPPSQHLASSQHESPP 497
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 144 QDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRG-DAHSPP 190
Q P G+ +R+PR PQ PP G PQ P A + A SPP
Sbjct: 78 QGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPP 125
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 150 GNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPP 190
G P P G PQ PPPG PQ P SPP
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGK-PQGPPPQGDKSRSPRSPP 94
Score = 28.5 bits (62), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 146 PRRWGNPARAPRP--GQRAPQPQPPPGPLPQAP 176
P++ GN + P P G QPQ PP PQ P
Sbjct: 132 PQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 164
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 138 QGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAP 176
QG Q P G P P G ++ P+ PPG PQ P
Sbjct: 63 QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGK-PQGP 100
Score = 27.3 bits (59), Expect = 8.8
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 150 GNPARAPRPGQRAPQ-PQPPPGPLPQAPQAVHTLRGDAHSPP 190
G P P+ PQ P PP G PQ PQA G PP
Sbjct: 126 GKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPA--GQPQGPP 165
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 32.7 bits (73), Expect = 0.21
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 145 DPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAH 187
D R G AR PRPG Q P PQAP+A TL+ H
Sbjct: 162 DGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEA-FTLKEKGH 203
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 32.3 bits (72), Expect = 0.27
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 152 PARAPRPGQRA--PQPQPP-----PGPLPQAPQAVHTLRGDAHSPPLMTFQSSSA 199
PA AP+P Q A PQ QPP P QAP A + P+MT + SS+
Sbjct: 169 PAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSS 223
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 32.3 bits (72), Expect = 0.27
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 152 PARAPRPGQRAPQPQ-------PPPGPLPQAPQAVHTLRGDAHSP 189
PAR PR Q +P P+ PP PLP +P+ G HSP
Sbjct: 813 PARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRPPSPPLGLCHSP 857
>gi|239754746 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.27
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 138 QGRWMKQDPRRWGNPARAPRPGQRA-PQPQPPPGPL---------PQAPQAVHT 181
Q R Q WG+ P P R+ P+PQPPP PL PQAP T
Sbjct: 100 QQRLSAQPLSEWGSCLPLPIPPSRSSPEPQPPPYPLVSPNLLQASPQAPLTCST 153
>gi|239749281 PREDICTED: hypothetical protein XP_002346979 [Homo
sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.27
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 138 QGRWMKQDPRRWGNPARAPRPGQRA-PQPQPPPGPL---------PQAPQAVHT 181
Q R Q WG+ P P R+ P+PQPPP PL PQAP T
Sbjct: 100 QQRLSAQPLSEWGSCLPLPIPPSRSSPEPQPPPYPLVSPNLLQASPQAPLTCST 153
>gi|239509062 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.3 bits (72), Expect = 0.27
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 138 QGRWMKQDPRRWGNPARAPRPGQRA-PQPQPPPGPL---------PQAPQAVHT 181
Q R Q WG+ P P R+ P+PQPPP PL PQAP T
Sbjct: 100 QQRLSAQPLSEWGSCLPLPIPPSRSSPEPQPPPYPLVSPNLLQASPQAPLTCST 153
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 32.3 bits (72), Expect = 0.27
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 134 RWGIQGRWMKQDPRRWGNPARAPRPGQRAPQPQPPPGPLPQAPQAVHTLRGDAHSPPLMT 193
RWG R R G+ RAP+ Q PQ PPP P PQ P + + P T
Sbjct: 571 RWGNNNRDNNNSNNR-GSYNRAPQQ-QPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAST 628
Query: 194 FQSSS 198
+ +S
Sbjct: 629 YNKNS 633
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,295,279
Number of Sequences: 37866
Number of extensions: 541141
Number of successful extensions: 11192
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 8252
Number of HSP's gapped (non-prelim): 2563
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.