Guide to the Human Genome
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Name: LOC100293654 Sequence: fasta or formatted (121aa) NCBI GI: 239756902
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         19           2
 C cysteine            1.7          2           1
 D aspartate           2.5          3           1
 E glutamate           3.3          4           1
 F phenylalanine       5.0          6           2
 G glycine             9.1         11           3
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine              4.1          5           1
 L leucine             5.0          6           1
 M methionine          0.8          1           1
 N asparagine          3.3          4           1
 P proline            12.4         15           3
 Q glutamine           2.5          3           1
 R arginine           11.6         14           2
 S serine             10.7         13           2
 T threonine           5.0          6           1
 V valine              3.3          4           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290979          1.000   PREDICTED: hypothetical protein XP_002347837 
LOC100288912          1.000   PREDICTED: hypothetical protein XP_002343614 
SYNPO                 0.062   synaptopodin isoform A 
HNRNPUL1              0.054   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.054   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
FNDC1                 0.049   fibronectin type III domain containing 1 
LOC100127891          0.049   PREDICTED: hypothetical protein 
FLJ22184              0.049   PREDICTED: hypothetical protein LOC80164 
LMO2                  0.049   LIM domain only 2 isoform 1 
KBTBD11               0.049   kelch repeat and BTB (POZ) domain containing 11 [Homo...
SRRM1                 0.049   serine/arginine repetitive matrix 1 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.045   TBP-associated factor 4 
FOXD1                 0.045   forkhead box D1 
LOC644246             0.045   PREDICTED: hypothetical protein LOC644246 
NCOR2                 0.045   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.045   nuclear receptor co-repressor 2 isoform 1 
SHANK3                0.045   SH3 and multiple ankyrin repeat domains 3 
SYNPO                 0.045   synaptopodin isoform B 
PXK                   0.045   PX domain containing serine/threonine kinase 
PWWP2A                0.045   PWWP domain containing 2A isoform b 
PWWP2A                0.045   PWWP domain containing 2A isoform a 
LOC100293268          0.045   PREDICTED: hypothetical protein 
JUND                  0.040   jun D proto-oncogene 
LOC100292853          0.040   PREDICTED: hypothetical protein 
LOC100288412          0.040   PREDICTED: hypothetical protein XP_002342328 
MAGI2                 0.040   membrane associated guanylate kinase, WW and PDZ dom...
WIPF3                 0.040   WAS/WASL interacting protein family, member 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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