Guide to the Human Genome
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Name: TMEM198 Sequence: fasta or formatted (360aa) NCBI GI: 52353302
Description:

transmembrane protein 198

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         36           4
 C cysteine            3.1         11           2
 D aspartate           2.8         10           2
 E glutamate           3.3         12           1
 F phenylalanine       3.9         14           2
 G glycine             8.9         32           3
 H histidine           0.3          1           1
 I isoleucine          2.5          9           1
 K lysine              1.7          6           2
 L leucine            16.7         60           4
 M methionine          1.7          6           1
 N asparagine          0.3          1           1
 P proline             9.2         33           2
 Q glutamine           3.3         12           2
 R arginine           10.0         36           3
 S serine              5.6         20           2
 T threonine           4.2         15           2
 V valine              7.5         27           2
 W tryptophan          1.9          7           1
 Y tyrosine            3.3         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 198 
LOC440104             0.121   PREDICTED: hypothetical protein LOC440104 isoform 1...
LOC440104             0.121   PREDICTED: similar to RIKEN cDNA 1110012D08 
LOC440104             0.121   PREDICTED: hypothetical protein LOC440104 
TM7SF3                0.035   transmembrane 7 superfamily member 3 
SRRM1                 0.020   serine/arginine repetitive matrix 1 
MFSD3                 0.017   major facilitator superfamily domain containing 3 [H...
UNC93B1               0.017   unc-93 homolog B1 
FAM26F                0.016   hypothetical protein LOC441168 
KIAA1429              0.016   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.016   hypothetical protein LOC25962 isoform 2 
SLC39A5               0.014   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.014   solute carrier family 39 (metal ion transporter), m...
KIAA1522              0.014   hypothetical protein LOC57648 
RAB11FIP1             0.013   RAB11 family interacting protein 1 isoform 3 
LMTK3                 0.013   lemur tyrosine kinase 3 
KLHDC7B               0.013   kelch domain containing 7B 
ZNF207                0.013   zinc finger protein 207 isoform c 
ZNF207                0.013   zinc finger protein 207 isoform a 
ZDHHC24               0.013   zinc finger, DHHC-type containing 24 
ZNF207                0.013   zinc finger protein 207 isoform b 
SYNJ1                 0.013   synaptojanin 1 isoform c 
LOC100293168          0.013   PREDICTED: hypothetical protein 
LOC100293859          0.013   PREDICTED: hypothetical protein 
LOC100287177          0.013   PREDICTED: hypothetical protein 
LOC100290583          0.013   PREDICTED: hypothetical protein XP_002346418 
LOC100287177          0.013   PREDICTED: hypothetical protein XP_002343692 
LOC100289620          0.013   PREDICTED: hypothetical protein XP_002342091 
PHACTR2               0.013   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.013   phosphatase and actin regulator 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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