Guide to the Human Genome
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Name: UBXN7 Sequence: fasta or formatted (489aa) NCBI GI: 149944496
Description:

UBX domain containing 7

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         31           2
 C cysteine            1.4          7           1
 D aspartate           5.7         28           1
 E glutamate          10.4         51           4
 F phenylalanine       4.3         21           1
 G glycine             6.5         32           3
 H histidine           2.9         14           1
 I isoleucine          4.7         23           2
 K lysine              5.3         26           2
 L leucine             8.8         43           2
 M methionine          1.8          9           1
 N asparagine          3.5         17           3
 P proline             5.7         28           2
 Q glutamine           6.3         31           2
 R arginine            5.7         28           3
 S serine              8.0         39           3
 T threonine           5.1         25           2
 V valine              5.1         25           2
 W tryptophan          0.8          4           1
 Y tyrosine            1.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UBX domain containing 7 
FAF1                  0.033   FAS-associated factor 1 
FAF2                  0.020   UBX domain containing 8 
UBXN1                 0.015   UBX domain protein 1 
PPP1R12B              0.014   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.014   protein phosphatase 1, regulatory (inhibitor) subunit...
CCDC136               0.011   coiled-coil domain containing 136 
C1orf107              0.011   digestive-organ expansion factor homolog 
RSF1                  0.011   remodeling and spacing factor 1 
NHS                   0.010   Nance-Horan syndrome protein isoform 1 
NHS                   0.010   Nance-Horan syndrome protein isoform 2 
ARID4B                0.010   AT rich interactive domain 4B isoform 2 
ARID4B                0.010   AT rich interactive domain 4B isoform 1 
HSP90AA1              0.010   heat shock 90kDa protein 1, alpha isoform 2 
HSP90AA1              0.010   heat shock 90kDa protein 1, alpha isoform 1 
GON4L                 0.010   gon-4-like isoform a 
VGF                   0.010   VGF nerve growth factor inducible precursor 
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
ATRX                  0.009   transcriptional regulator ATRX isoform 2 
ATRX                  0.009   transcriptional regulator ATRX isoform 1 
NSFL1C                0.009   p47 protein isoform b 
NSFL1C                0.009   p47 protein isoform a 
WAPAL                 0.009   wings apart-like homolog 
TTBK1                 0.008   tau tubulin kinase 1 
PCDH15                0.008   protocadherin 15 isoform CD2-1 precursor 
UBXN4                 0.008   UBX domain containing 2 
IWS1                  0.008   IWS1 homolog 
SUPT5H                0.008   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.008   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.008   suppressor of Ty 5 homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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