Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SUPT5H Sequence: fasta or formatted (1087aa) NCBI GI: 195546900
Description:

suppressor of Ty 5 homolog isoform a

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [1087aa] suppressor of Ty 5 homolog isoform a
alt prot [1083aa] suppressor of Ty 5 homolog isoform b
alt mRNA [1087aa] suppressor of Ty 5 homolog isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         50           2
 C cysteine            0.6          7           1
 D aspartate           6.9         75           3
 E glutamate           9.4        102           9
 F phenylalanine       2.9         31           1
 G glycine             8.9         97           3
 H histidine           2.1         23           1
 I isoleucine          4.4         48           1
 K lysine              5.7         62           2
 L leucine             6.2         67           2
 M methionine          2.4         26           1
 N asparagine          3.2         35           2
 P proline             7.0         76           2
 Q glutamine           4.9         53           3
 R arginine            5.6         61           2
 S serine              7.9         86           2
 T threonine           5.5         60           2
 V valine              7.3         79           2
 W tryptophan          0.8          9           1
 Y tyrosine            3.7         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppressor of Ty 5 homolog isoform a 
SUPT5H                1.000   suppressor of Ty 5 homolog isoform a 
SUPT5H                1.000   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.994   suppressor of Ty 5 homolog isoform b 
POLR2A                0.022   DNA-directed RNA polymerase II A 
ANP32E                0.018   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.018   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.018   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.018   WAS/WASL interacting protein family, member 1 
PELP1                 0.018   proline, glutamic acid and leucine rich protein 1 [...
ATRX                  0.018   transcriptional regulator ATRX isoform 2 
ATRX                  0.018   transcriptional regulator ATRX isoform 1 
MYT1L                 0.017   myelin transcription factor 1-like 
MYT1                  0.016   myelin transcription factor 1 
GRINA                 0.016   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.016   glutamate receptor, ionotropic, N-methyl D-aspartate...
YTHDC1                0.016   splicing factor YT521-B isoform 2 
YTHDC1                0.016   splicing factor YT521-B isoform 1 
RPGR                  0.016   retinitis pigmentosa GTPase regulator isoform C [Hom...
MAGEC1                0.016   melanoma antigen family C, 1 
NCL                   0.016   nucleolin 
ANP32B                0.016   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
LOC647020             0.016   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.016   PREDICTED: similar to acidic (leucine-rich) nuclear...
TRIM44                0.016   DIPB protein 
TCF20                 0.016   transcription factor 20 isoform 2 
TCF20                 0.016   transcription factor 20 isoform 1 
MYST4                 0.015   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press