Guide to the Human Genome
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Name: USP43 Sequence: fasta or formatted (1123aa) NCBI GI: 148612811
Description:

ubiquitin specific protease 43

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         83           2
 C cysteine            2.0         23           1
 D aspartate           3.8         43           2
 E glutamate           5.3         60           2
 F phenylalanine       3.6         40           2
 G glycine             8.2         92           3
 H histidine           2.2         25           2
 I isoleucine          1.7         19           2
 K lysine              4.0         45           2
 L leucine            11.1        125           2
 M methionine          1.3         15           1
 N asparagine          2.8         31           1
 P proline             9.3        104           2
 Q glutamine           5.6         63           4
 R arginine            7.7         87           4
 S serine             11.4        128           3
 T threonine           3.7         41           2
 V valine              5.4         61           2
 W tryptophan          1.5         17           1
 Y tyrosine            1.9         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 43 
USP31                 0.306   ubiquitin specific peptidase 31 
USP4                  0.063   ubiquitin specific protease 4 isoform a 
USP4                  0.063   ubiquitin specific protease 4 isoform b 
USP15                 0.059   ubiquitin specific peptidase 15 
USP11                 0.052   ubiquitin specific peptidase 11 
USP8                  0.047   ubiquitin specific peptidase 8 
USP8                  0.047   ubiquitin specific peptidase 8 
USP8                  0.047   ubiquitin specific peptidase 8 
USP19                 0.045   ubiquitin thioesterase 19 
USP2                  0.041   ubiquitin specific peptidase 2 isoform b 
USP2                  0.041   ubiquitin specific peptidase 2 isoform a 
USP6                  0.040   ubiquitin specific protease 6 
USP32                 0.039   ubiquitin specific protease 32 
USP51                 0.038   ubiquitin specific protease 51 
USP33                 0.038   ubiquitin specific protease 33 isoform 3 
USP33                 0.038   ubiquitin specific protease 33 isoform 1 
USP33                 0.038   ubiquitin specific protease 33 isoform 2 
USP20                 0.038   ubiquitin specific protease 20 
USP20                 0.038   ubiquitin specific protease 20 
USP20                 0.038   ubiquitin specific protease 20 
USP21                 0.034   ubiquitin-specific protease 21 
USP21                 0.034   ubiquitin-specific protease 21 
USP3                  0.034   ubiquitin thiolesterase 3 
USP22                 0.033   ubiquitin thiolesterase 22 
USP27X                0.032   X-linked ubiquitin thioesterase 27 
USP50                 0.027   ubiquitin specific protease 50 
USP44                 0.024   ubiquitin thiolesterase 44 
USP44                 0.024   ubiquitin thiolesterase 44 
USP17L8               0.021   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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