Guide to the Human Genome
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Name: USP8 Sequence: fasta or formatted (1118aa) NCBI GI: 190684694
Description:

ubiquitin specific peptidase 8

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [1118aa] ubiquitin specific peptidase 8
alt mRNA [1118aa] ubiquitin specific peptidase 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         64           2
 C cysteine            1.5         17           1
 D aspartate           5.3         59           2
 E glutamate           9.5        106           3
 F phenylalanine       2.7         30           1
 G glycine             4.5         50           2
 H histidine           2.1         24           1
 I isoleucine          4.7         53           2
 K lysine             10.5        117           3
 L leucine             8.1         91           3
 M methionine          1.5         17           2
 N asparagine          4.2         47           2
 P proline             5.9         66           3
 Q glutamine           5.0         56           3
 R arginine            5.5         62           2
 S serine              8.3         93           3
 T threonine           6.0         67           2
 V valine              4.6         51           2
 W tryptophan          1.0         11           1
 Y tyrosine            3.3         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 8 
USP8                  1.000   ubiquitin specific peptidase 8 
USP8                  1.000   ubiquitin specific peptidase 8 
USP2                  0.110   ubiquitin specific peptidase 2 isoform b 
USP2                  0.110   ubiquitin specific peptidase 2 isoform a 
USP50                 0.088   ubiquitin specific protease 50 
USP21                 0.084   ubiquitin-specific protease 21 
USP21                 0.084   ubiquitin-specific protease 21 
USP15                 0.077   ubiquitin specific peptidase 15 
USP3                  0.076   ubiquitin thiolesterase 3 
USP11                 0.074   ubiquitin specific peptidase 11 
USP4                  0.074   ubiquitin specific protease 4 isoform a 
USP4                  0.074   ubiquitin specific protease 4 isoform b 
USP19                 0.069   ubiquitin thioesterase 19 
USP22                 0.065   ubiquitin thiolesterase 22 
USP6                  0.064   ubiquitin specific protease 6 
USP32                 0.063   ubiquitin specific protease 32 
USP27X                0.059   X-linked ubiquitin thioesterase 27 
USP51                 0.057   ubiquitin specific protease 51 
USP44                 0.052   ubiquitin thiolesterase 44 
USP44                 0.052   ubiquitin thiolesterase 44 
USP33                 0.051   ubiquitin specific protease 33 isoform 3 
USP33                 0.049   ubiquitin specific protease 33 isoform 1 
USP33                 0.049   ubiquitin specific protease 33 isoform 2 
USP12                 0.048   ubiquitin thiolesterase 12 
USP43                 0.048   ubiquitin specific protease 43 
USP46                 0.047   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.047   ubiquitin specific peptidase 46 isoform 1 
USP31                 0.047   ubiquitin specific peptidase 31 
USP20                 0.047   ubiquitin specific protease 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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