Guide to the Human Genome
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Name: USP20 Sequence: fasta or formatted (914aa) NCBI GI: 183397134
Description:

ubiquitin specific protease 20

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [914aa] ubiquitin specific protease 20
alt mRNA [914aa] ubiquitin specific protease 20
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         65           2
 C cysteine            3.5         32           1
 D aspartate           5.6         51           3
 E glutamate           7.7         70           2
 F phenylalanine       3.5         32           2
 G glycine             6.6         60           3
 H histidine           3.1         28           3
 I isoleucine          4.0         37           1
 K lysine              5.3         48           2
 L leucine             8.6         79           3
 M methionine          1.4         13           1
 N asparagine          3.1         28           1
 P proline             6.0         55           3
 Q glutamine           4.8         44           2
 R arginine            5.6         51           3
 S serine              8.9         81           3
 T threonine           4.2         38           2
 V valine              6.5         59           2
 W tryptophan          1.4         13           1
 Y tyrosine            3.3         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 20 
USP20                 1.000   ubiquitin specific protease 20 
USP20                 1.000   ubiquitin specific protease 20 
USP33                 0.586   ubiquitin specific protease 33 isoform 1 
USP33                 0.586   ubiquitin specific protease 33 isoform 2 
USP33                 0.497   ubiquitin specific protease 33 isoform 3 
USP3                  0.058   ubiquitin thiolesterase 3 
USP8                  0.056   ubiquitin specific peptidase 8 
USP8                  0.056   ubiquitin specific peptidase 8 
USP8                  0.056   ubiquitin specific peptidase 8 
USP2                  0.054   ubiquitin specific peptidase 2 isoform b 
USP2                  0.054   ubiquitin specific peptidase 2 isoform a 
USP22                 0.052   ubiquitin thiolesterase 22 
USP31                 0.049   ubiquitin specific peptidase 31 
USP27X                0.048   X-linked ubiquitin thioesterase 27 
USP51                 0.048   ubiquitin specific protease 51 
USP4                  0.047   ubiquitin specific protease 4 isoform a 
USP4                  0.047   ubiquitin specific protease 4 isoform b 
USP48                 0.046   ubiquitin specific protease 48 isoform a 
USP43                 0.046   ubiquitin specific protease 43 
USP21                 0.045   ubiquitin-specific protease 21 
USP21                 0.045   ubiquitin-specific protease 21 
USP11                 0.043   ubiquitin specific peptidase 11 
USP15                 0.042   ubiquitin specific peptidase 15 
USP44                 0.042   ubiquitin thiolesterase 44 
USP44                 0.042   ubiquitin thiolesterase 44 
USP19                 0.038   ubiquitin thioesterase 19 
USP6                  0.033   ubiquitin specific protease 6 
USP48                 0.033   ubiquitin specific protease 48 isoform b 
USP32                 0.033   ubiquitin specific protease 32 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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