Guide to the Human Genome
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Name: USP3 Sequence: fasta or formatted (520aa) NCBI GI: 55770886
Description:

ubiquitin thiolesterase 3

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         27           2
 C cysteine            5.4         28           2
 D aspartate           4.4         23           2
 E glutamate           5.8         30           2
 F phenylalanine       4.4         23           1
 G glycine             5.4         28           2
 H histidine           4.0         21           2
 I isoleucine          2.5         13           1
 K lysine              7.5         39           3
 L leucine            10.2         53           2
 M methionine          1.3          7           1
 N asparagine          5.6         29           2
 P proline             3.1         16           1
 Q glutamine           4.0         21           3
 R arginine            4.6         24           2
 S serine              9.0         47           3
 T threonine           6.0         31           2
 V valine              6.5         34           3
 W tryptophan          1.3          7           1
 Y tyrosine            3.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin thiolesterase 3 
USP44                 0.169   ubiquitin thiolesterase 44 
USP44                 0.169   ubiquitin thiolesterase 44 
USP51                 0.168   ubiquitin specific protease 51 
USP2                  0.164   ubiquitin specific peptidase 2 isoform b 
USP2                  0.161   ubiquitin specific peptidase 2 isoform a 
USP8                  0.160   ubiquitin specific peptidase 8 
USP8                  0.160   ubiquitin specific peptidase 8 
USP8                  0.160   ubiquitin specific peptidase 8 
USP22                 0.158   ubiquitin thiolesterase 22 
USP27X                0.145   X-linked ubiquitin thioesterase 27 
USP21                 0.140   ubiquitin-specific protease 21 
USP21                 0.140   ubiquitin-specific protease 21 
USP49                 0.137   ubiquitin thioesterase 49 
USP36                 0.117   ubiquitin specific peptidase 36 
USP42                 0.117   ubiquitin specific peptidase 42 
USP12                 0.112   ubiquitin thiolesterase 12 
USP33                 0.109   ubiquitin specific protease 33 isoform 3 
USP15                 0.109   ubiquitin specific peptidase 15 
USP4                  0.108   ubiquitin specific protease 4 isoform a 
USP4                  0.108   ubiquitin specific protease 4 isoform b 
USP46                 0.106   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.106   ubiquitin specific peptidase 46 isoform 1 
USP33                 0.105   ubiquitin specific protease 33 isoform 1 
USP33                 0.105   ubiquitin specific protease 33 isoform 2 
USP20                 0.101   ubiquitin specific protease 20 
USP20                 0.101   ubiquitin specific protease 20 
USP20                 0.101   ubiquitin specific protease 20 
LOC100288520          0.099   PREDICTED: hypothetical protein XP_002342486 
USP50                 0.098   ubiquitin specific protease 50 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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