Guide to the Human Genome
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Name: USP33 Sequence: fasta or formatted (942aa) NCBI GI: 42516567
Description:

ubiquitin specific protease 33 isoform 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [828aa] ubiquitin specific protease 33 isoform 3
alt prot [911aa] ubiquitin specific protease 33 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         42           2
 C cysteine            3.5         33           1
 D aspartate           5.6         53           2
 E glutamate           7.7         73           2
 F phenylalanine       4.1         39           2
 G glycine             5.1         48           3
 H histidine           2.9         27           2
 I isoleucine          5.5         52           2
 K lysine              6.7         63           2
 L leucine             8.7         82           2
 M methionine          1.8         17           1
 N asparagine          5.2         49           2
 P proline             5.3         50           2
 Q glutamine           5.1         48           2
 R arginine            4.2         40           3
 S serine              8.5         80           3
 T threonine           5.6         53           2
 V valine              5.8         55           2
 W tryptophan          1.5         14           1
 Y tyrosine            2.5         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 33 isoform 1 
USP33                 0.968   ubiquitin specific protease 33 isoform 2 
USP33                 0.871   ubiquitin specific protease 33 isoform 3 
USP20                 0.568   ubiquitin specific protease 20 
USP20                 0.568   ubiquitin specific protease 20 
USP20                 0.568   ubiquitin specific protease 20 
USP3                  0.058   ubiquitin thiolesterase 3 
USP8                  0.057   ubiquitin specific peptidase 8 
USP8                  0.057   ubiquitin specific peptidase 8 
USP8                  0.057   ubiquitin specific peptidase 8 
USP2                  0.056   ubiquitin specific peptidase 2 isoform b 
USP2                  0.056   ubiquitin specific peptidase 2 isoform a 
USP45                 0.056   ubiquitin specific peptidase 45 
USP22                 0.050   ubiquitin thiolesterase 22 
USP27X                0.049   X-linked ubiquitin thioesterase 27 
USP4                  0.048   ubiquitin specific protease 4 isoform a 
USP4                  0.048   ubiquitin specific protease 4 isoform b 
USP31                 0.048   ubiquitin specific peptidase 31 
USP21                 0.046   ubiquitin-specific protease 21 
USP21                 0.046   ubiquitin-specific protease 21 
USP43                 0.045   ubiquitin specific protease 43 
USP15                 0.044   ubiquitin specific peptidase 15 
USP51                 0.044   ubiquitin specific protease 51 
USP11                 0.043   ubiquitin specific peptidase 11 
USP48                 0.040   ubiquitin specific protease 48 isoform a 
USP44                 0.039   ubiquitin thiolesterase 44 
USP19                 0.036   ubiquitin thioesterase 19 
USP16                 0.034   ubiquitin specific protease 16 isoform b 
USP16                 0.034   ubiquitin specific protease 16 isoform a 
USP16                 0.034   ubiquitin specific protease 16 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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