Guide to the Human Genome
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Name: USP33 Sequence: fasta or formatted (911aa) NCBI GI: 42516565
Description:

ubiquitin specific protease 33 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [828aa] ubiquitin specific protease 33 isoform 3
alt prot [942aa] ubiquitin specific protease 33 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         42           2
 C cysteine            3.6         33           1
 D aspartate           5.8         53           2
 E glutamate           7.8         71           2
 F phenylalanine       4.2         38           2
 G glycine             5.0         46           3
 H histidine           2.7         25           2
 I isoleucine          5.4         49           2
 K lysine              6.5         59           2
 L leucine             8.6         78           2
 M methionine          1.8         16           1
 N asparagine          5.2         47           2
 P proline             5.3         48           2
 Q glutamine           5.2         47           2
 R arginine            4.4         40           3
 S serine              8.5         77           3
 T threonine           5.5         50           2
 V valine              5.9         54           2
 W tryptophan          1.5         14           1
 Y tyrosine            2.6         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 33 isoform 2 
USP33                 1.000   ubiquitin specific protease 33 isoform 1 
USP33                 0.866   ubiquitin specific protease 33 isoform 3 
USP20                 0.587   ubiquitin specific protease 20 
USP20                 0.587   ubiquitin specific protease 20 
USP20                 0.587   ubiquitin specific protease 20 
USP3                  0.060   ubiquitin thiolesterase 3 
USP8                  0.059   ubiquitin specific peptidase 8 
USP8                  0.059   ubiquitin specific peptidase 8 
USP8                  0.059   ubiquitin specific peptidase 8 
USP2                  0.058   ubiquitin specific peptidase 2 isoform b 
USP2                  0.058   ubiquitin specific peptidase 2 isoform a 
USP45                 0.058   ubiquitin specific peptidase 45 
USP22                 0.052   ubiquitin thiolesterase 22 
USP27X                0.051   X-linked ubiquitin thioesterase 27 
USP4                  0.050   ubiquitin specific protease 4 isoform a 
USP4                  0.050   ubiquitin specific protease 4 isoform b 
USP31                 0.050   ubiquitin specific peptidase 31 
USP21                 0.048   ubiquitin-specific protease 21 
USP21                 0.048   ubiquitin-specific protease 21 
USP43                 0.046   ubiquitin specific protease 43 
USP15                 0.046   ubiquitin specific peptidase 15 
USP51                 0.045   ubiquitin specific protease 51 
USP11                 0.044   ubiquitin specific peptidase 11 
USP48                 0.041   ubiquitin specific protease 48 isoform a 
USP44                 0.040   ubiquitin thiolesterase 44 
USP19                 0.038   ubiquitin thioesterase 19 
USP16                 0.035   ubiquitin specific protease 16 isoform b 
USP16                 0.035   ubiquitin specific protease 16 isoform a 
USP16                 0.035   ubiquitin specific protease 16 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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