Guide to the Human Genome
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Name: USP11 Sequence: fasta or formatted (963aa) NCBI GI: 24234683
Description:

ubiquitin specific peptidase 11

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         58           6
 C cysteine            2.2         21           1
 D aspartate           6.4         62           2
 E glutamate           8.4         81           2
 F phenylalanine       4.0         39           2
 G glycine             5.8         56           2
 H histidine           3.1         30           2
 I isoleucine          3.5         34           2
 K lysine              4.7         45           3
 L leucine             9.3         90           3
 M methionine          1.8         17           2
 N asparagine          4.4         42           3
 P proline             6.1         59           2
 Q glutamine           4.3         41           2
 R arginine            6.1         59           4
 S serine              6.7         65           2
 T threonine           4.2         40           2
 V valine              7.3         70           2
 W tryptophan          1.8         17           1
 Y tyrosine            3.8         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 11 
USP15                 0.398   ubiquitin specific peptidase 15 
USP4                  0.395   ubiquitin specific protease 4 isoform b 
USP4                  0.386   ubiquitin specific protease 4 isoform a 
USP19                 0.185   ubiquitin thioesterase 19 
USP32                 0.136   ubiquitin specific protease 32 
USP6                  0.115   ubiquitin specific protease 6 
USP8                  0.084   ubiquitin specific peptidase 8 
USP8                  0.084   ubiquitin specific peptidase 8 
USP8                  0.084   ubiquitin specific peptidase 8 
USP2                  0.066   ubiquitin specific peptidase 2 isoform b 
USP2                  0.066   ubiquitin specific peptidase 2 isoform a 
USP43                 0.060   ubiquitin specific protease 43 
USP31                 0.058   ubiquitin specific peptidase 31 
USP3                  0.052   ubiquitin thiolesterase 3 
USP21                 0.046   ubiquitin-specific protease 21 
USP21                 0.046   ubiquitin-specific protease 21 
USP33                 0.042   ubiquitin specific protease 33 isoform 3 
USP33                 0.042   ubiquitin specific protease 33 isoform 1 
USP33                 0.042   ubiquitin specific protease 33 isoform 2 
LOC100294407          0.041   PREDICTED: similar to hCG2039376 
USP20                 0.041   ubiquitin specific protease 20 
USP20                 0.041   ubiquitin specific protease 20 
USP20                 0.041   ubiquitin specific protease 20 
USP51                 0.036   ubiquitin specific protease 51 
USP27X                0.033   X-linked ubiquitin thioesterase 27 
USP22                 0.032   ubiquitin thiolesterase 22 
USP16                 0.030   ubiquitin specific protease 16 isoform b 
USP16                 0.030   ubiquitin specific protease 16 isoform a 
USP16                 0.030   ubiquitin specific protease 16 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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