Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148235002
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148235002 TBC1 domain family, member 26 [Homo sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148235002 TBC1 domain family, member 26 [Homo sapiens] 509 e-145
gi|239756750 PREDICTED: similar to TBC1 domain family, member 28... 359 1e-99
gi|151108489 TBC1 domain family, member 28 [Homo sapiens] 354 5e-98
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 241 3e-64
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 238 5e-63
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 238 5e-63
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 236 1e-62
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 236 1e-62
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 236 1e-62
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 236 1e-62
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 236 1e-62
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 233 9e-62
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 178 3e-45
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 178 3e-45
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 149 3e-36
gi|13994322 TBC1 domain family, member 10A [Homo sapiens] 93 2e-19
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 92 6e-19
gi|38348348 TBC1 domain family, member 10C [Homo sapiens] 86 4e-17
gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Ho... 71 8e-13
gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 69 3e-12
gi|148806902 TBC1 domain family, member 12 [Homo sapiens] 67 1e-11
gi|156231067 TBC1 domain family, member 8 [Homo sapiens] 66 3e-11
gi|38570103 TBC1 domain family, member 8B (with GRAM domain) iso... 65 6e-11
gi|38570101 TBC1 domain family, member 8B (with GRAM domain) iso... 65 6e-11
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens] 65 7e-11
gi|118722351 growth hormone regulated TBC protein 1 [Homo sapiens] 65 7e-11
gi|164565381 TBC1 domain family, member 14 isoform b [Homo sapiens] 62 4e-10
gi|164565368 TBC1 domain family, member 14 isoform a [Homo sapiens] 62 4e-10
gi|164565366 TBC1 domain family, member 14 isoform a [Homo sapiens] 62 4e-10
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso... 62 6e-10
>gi|148235002 TBC1 domain family, member 26 [Homo sapiens]
Length = 250
Score = 509 bits (1312), Expect = e-145
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV
Sbjct: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
Query: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 120
SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI
Sbjct: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 120
Query: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
Sbjct: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
Query: 181 NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSLWYSTAQILPGSRGSYRTRS 240
NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSLWYSTAQILPGSRGSYRTRS
Sbjct: 181 NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSLWYSTAQILPGSRGSYRTRS 240
Query: 241 RCCTSPSQRS 250
RCCTSPSQRS
Sbjct: 241 RCCTSPSQRS 250
>gi|239756750 PREDICTED: similar to TBC1 domain family, member 28
[Homo sapiens]
Length = 234
Score = 359 bits (921), Expect = 1e-99
Identities = 178/182 (97%), Positives = 179/182 (98%)
Query: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELP V
Sbjct: 25 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPHV 84
Query: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 120
SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRV KVIPLAVRGRA SLLLDID+I
Sbjct: 85 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI 144
Query: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
Sbjct: 145 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 204
Query: 181 NP 182
NP
Sbjct: 205 NP 206
>gi|151108489 TBC1 domain family, member 28 [Homo sapiens]
Length = 210
Score = 354 bits (908), Expect = 5e-98
Identities = 177/182 (97%), Positives = 178/182 (97%)
Query: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
MEMD DP NLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV
Sbjct: 1 MEMDEDPDNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
Query: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 120
SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRV KVIPLAVRGRA SLLLDID+I
Sbjct: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKI 120
Query: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY
Sbjct: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
Query: 181 NP 182
NP
Sbjct: 181 NP 182
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 241 bits (616), Expect = 3e-64
Identities = 123/221 (55%), Positives = 158/221 (71%), Gaps = 1/221 (0%)
Query: 1 MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRV 60
M+M + +L AQ + +I++ KY++GHRAG D G E V + + GI+HE ELP V
Sbjct: 1 MDMVENADSLQAQERKDILM-KYDKGHRAGLPEDKGPEPVGINSSIDRFGILHETELPPV 59
Query: 61 SALEVKQRRKESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRI 120
+A E K+ R+E RT+KW +ML +W Y+ + KL RVYK IP+ +RG WS+LL+I I
Sbjct: 60 TAREAKKIRREMTRTSKWMEMLGEWETYKHSSKLIDRVYKGIPMNIRGPVWSVLLNIQEI 119
Query: 121 KSQNPGKYKVMKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAY 180
K +NPG+Y++MKE+GKRSS IH I LDV TL+ H+ F R+G KQ+EL IL+AYS Y
Sbjct: 120 KLKNPGRYQIMKERGKRSSEHIHHIDLDVRTTLRNHVFFRDRYGAKQRELFYILLAYSEY 179
Query: 181 NPEVGYHRDLSRITAILLLCLPEEDAFWALTQLLAGERHSL 221
NPEVGY RDLS ITA+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 180 NPEVGYCRDLSHITALFLLYLPEEDAFWALVQLLASERHSL 220
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 238 bits (606), Expect = 5e-63
Identities = 122/206 (59%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I D+S TL+KHM F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 238 bits (606), Expect = 5e-63
Identities = 122/206 (59%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I D+S TL+KHM F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 236 bits (603), Expect = 1e-62
Identities = 122/206 (59%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I DVS TL+KH+ F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 236 bits (603), Expect = 1e-62
Identities = 122/206 (59%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I DVS TL+KH+ F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 236 bits (603), Expect = 1e-62
Identities = 122/206 (59%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I DVS TL+KH+ F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 236 bits (602), Expect = 1e-62
Identities = 121/206 (58%), Positives = 148/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GH+AG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHQAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I D+S TL+KHM F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 236 bits (602), Expect = 1e-62
Identities = 121/206 (58%), Positives = 147/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+I+ +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
KRSS I I D+S TL+KHM F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL PEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYFPEEDAFWALVQLLASERHSL 221
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 233 bits (595), Expect = 9e-62
Identities = 120/206 (58%), Positives = 147/206 (71%), Gaps = 5/206 (2%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNN---LGIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + R Y NN LGIVHE ELP ++A E KQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPF--RSYNNNVDHLGIVHETELPPLTAREAKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW ML DW KY+S++KL R YK +P+ +RG WS+LL+ + +K +NPG+Y++MKEKG
Sbjct: 76 SKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITA 195
K+SS I I DVS TL+KH+ F R+G KQ+EL IL+AY YNPEVGY RDLS I A
Sbjct: 136 KKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAA 195
Query: 196 ILLLCLPEEDAFWALTQLLAGERHSL 221
+ LL LPEEDAFWAL QLLA ERHSL
Sbjct: 196 LFLLYLPEEDAFWALVQLLASERHSL 221
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 178 bits (452), Expect = 3e-45
Identities = 92/205 (44%), Positives = 133/205 (64%), Gaps = 4/205 (1%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVD--VRKYTNNLGIVHEMELPRVSALEVKQRRKESKRTN 76
I+ KY++G R GA ++ E D V K T+ G +HE ELP + +Q+ E +RT
Sbjct: 18 IVAKYDRG-REGAEIE-PWEDADYLVYKVTDRFGFLHEEELPDHNVAVERQKHLEIERTT 75
Query: 77 KWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKGK 136
KW KML W KY++T+K +R+YK IPL +RG W+LLL+I ++K + Y +K + +
Sbjct: 76 KWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRAR 135
Query: 137 RSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAI 196
S I I LDV+ T + H+MF R+GVKQQ L +L AYS YN EVGY + +S+ITA+
Sbjct: 136 GCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITAL 195
Query: 197 LLLCLPEEDAFWALTQLLAGERHSL 221
LL+ + EEDAFWAL +L +G +H++
Sbjct: 196 LLMYMNEEDAFWALVKLFSGPKHAM 220
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 178 bits (452), Expect = 3e-45
Identities = 92/205 (44%), Positives = 133/205 (64%), Gaps = 4/205 (1%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVD--VRKYTNNLGIVHEMELPRVSALEVKQRRKESKRTN 76
I+ KY++G R GA ++ E D V K T+ G +HE ELP + +Q+ E +RT
Sbjct: 35 IVAKYDRG-REGAEIE-PWEDADYLVYKVTDRFGFLHEEELPDHNVAVERQKHLEIERTT 92
Query: 77 KWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKGK 136
KW KML W KY++T+K +R+YK IPL +RG W+LLL+I ++K + Y +K + +
Sbjct: 93 KWLKMLKGWEKYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRAR 152
Query: 137 RSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAI 196
S I I LDV+ T + H+MF R+GVKQQ L +L AYS YN EVGY + +S+ITA+
Sbjct: 153 GCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITAL 212
Query: 197 LLLCLPEEDAFWALTQLLAGERHSL 221
LL+ + EEDAFWAL +L +G +H++
Sbjct: 213 LLMYMNEEDAFWALVKLFSGPKHAM 237
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 149 bits (375), Expect = 3e-36
Identities = 75/149 (50%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Query: 19 IITKYEQGHRAGAAVDLGHEQVDVRKYTNNL---GIVHEMELPRVSALEVKQRRKESKRT 75
II KYE+GHRAG D G + Y NN+ G+ HE ELP ++A EVKQ R+E R
Sbjct: 18 IIMKYEKGHRAGLPEDKGPKPFG--SYNNNIDHFGMQHETELPPLTAREVKQIRREISRK 75
Query: 76 NKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKG 135
+KW KML +W Y++++KL R Y+ IP+ +RG WS+LL+I+ IK +NPG+Y++MKEKG
Sbjct: 76 SKWVKMLGEWDTYKNSRKLIDRAYQGIPMNIRGPMWSVLLNIEEIKLKNPGRYQIMKEKG 135
Query: 136 KRSSRIIHCIQLDVSHTLQKHMMFIQRFG 164
KRSS I + LDVS TL++H+ F R+G
Sbjct: 136 KRSSEHIQQMDLDVSGTLRRHIFFRDRYG 164
>gi|13994322 TBC1 domain family, member 10A [Homo sapiens]
Length = 508
Score = 93.2 bits (230), Expect = 2e-19
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 73 KRTNKWQKMLADWTKY--RSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKV 130
+R +KW ML +W K+ + KK+ R K IP ++RGRAW L QNPGK+
Sbjct: 81 QRESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPSLRGRAWQYLSGGKVKLQQNPGKFDE 140
Query: 131 MKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDL 190
+ + + + I+ D+ H MF+ R G QQ+L +L AY+ Y PE GY +
Sbjct: 141 L-DMSPGDPKWLDVIERDLHRQFPFHEMFVSRGGHGQQDLFRVLKAYTLYRPEEGYCQAQ 199
Query: 191 SRITAILLLCLPEEDAFWALTQL 213
+ I A+LL+ +P E AFW L Q+
Sbjct: 200 APIAAVLLMHMPAEQAFWCLVQI 222
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 91.7 bits (226), Expect = 6e-19
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 3/143 (2%)
Query: 73 KRTNKWQKMLADWTKYRSTK--KLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKV 130
+R KW M ++W K+ S + K+ R K IP ++R +AW L + + QNPGK++
Sbjct: 330 QRELKWLDMFSNWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEE 389
Query: 131 MKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDL 190
+ E+ + + I+ D+ H MF R G QQ+L IL AY+ Y P+ GY +
Sbjct: 390 L-ERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQ 448
Query: 191 SRITAILLLCLPEEDAFWALTQL 213
+ + A+LL+ +P E AFW L Q+
Sbjct: 449 APVAAVLLMHMPAEQAFWCLVQI 471
>gi|38348348 TBC1 domain family, member 10C [Homo sapiens]
Length = 446
Score = 85.5 bits (210), Expect = 4e-17
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 73 KRTNKWQKMLADWTKYRST--KKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKV 130
+R KW +M + W K S KK+ + K IP A+R R W LL + +PG Y+
Sbjct: 62 QREMKWVEMTSHWEKTMSRRYKKVKMQCRKGIPSALRARCWPLLCGAHVCQKNSPGTYQE 121
Query: 131 MKEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDL 190
+ E + + I D+ H MF+ G QQ L +L AY+ Y PE GY +
Sbjct: 122 LAE-APGDPQWMETIGRDLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQ 180
Query: 191 SRITAILLLCLPEEDAFWALTQL 213
+ A+LL+ LP E+AFW L Q+
Sbjct: 181 GPVAAVLLMHLPPEEAFWCLVQI 203
>gi|139394668 TBC1 domain family, member 9 (with GRAM domain) [Homo
sapiens]
Length = 1266
Score = 71.2 bits (173), Expect = 8e-13
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 70 KESKRTNKWQKMLADWTK----YRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNP 125
KE + W+ A++ + YR T+K + V K IP ++RG W LL K+ +P
Sbjct: 481 KEFLKEQAWKIHFAEYGQGICMYR-TEKTRELVLKGIPESMRGELWLLLSGAINEKATHP 539
Query: 126 GKYKVMKEKGKRSSRII-HCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEV 184
G Y+ + EK + I+ D+ +L +H F G+ L +L AY+ NP +
Sbjct: 540 GYYEDLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAA--LRRVLTAYAFRNPNI 597
Query: 185 GYHRDLSRITAILLLCLPEEDAFWALTQL 213
GY + ++ +T++LLL EE+AFW L L
Sbjct: 598 GYCQAMNIVTSVLLLYAKEEEAFWLLVAL 626
>gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
[Homo sapiens]
Length = 1168
Score = 69.3 bits (168), Expect = 3e-12
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 75 TNKWQKMLADWTKYR---STKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVM 131
T W+KML+ + + +K+ V + +P RG W L + +K Q P K +
Sbjct: 771 TTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPK 830
Query: 132 ----KEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYH 187
KE K+ + H I +D+ T H F + G Q L +IL AYS + EVGY
Sbjct: 831 DVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYC 890
Query: 188 RDLSRITAILLLCLPEEDAFWALTQLL 214
+ LS + ILLL + EE+AF L L+
Sbjct: 891 QGLSFVAGILLLHMSEEEAFKMLKFLM 917
>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
Length = 775
Score = 67.4 bits (163), Expect = 1e-11
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 3 MDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPRVSA 62
++ P NLPA+ + + E A ++ RK R+
Sbjct: 399 LEDRPSNLPAKSVEEALRHRQEYDEMVAEAKKREIKEAHKRK--------------RIMK 444
Query: 63 LEVKQRRKESKRTNKW-QKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIK 121
KQ + W ++L +W RST+++ + ++ +P +VRG+ WSL + +
Sbjct: 445 ERFKQEENIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNEL-- 502
Query: 122 SQNPGKYKVM----KEKGKRSSRI-----------------IHCIQLDVSHTLQKHMMFI 160
+ P Y++ KE+ K S + I+LD+S T +F
Sbjct: 503 NITPELYEIFLSRAKERWKSFSETSSENDTEGVSVADREASLELIKLDISRTFPSLYIF- 561
Query: 161 QRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWALTQLL 214
Q+ G L IL AY+ Y P+VGY + +S I A+L+L L E DAF A LL
Sbjct: 562 QKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLL 615
>gi|156231067 TBC1 domain family, member 8 [Homo sapiens]
Length = 1140
Score = 65.9 bits (159), Expect = 3e-11
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 91 TKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKY-KVMKEKGKRSSRIIHCIQLDV 149
T+K+ + V IP ++RGR W L D + +PG Y +++E + + I+ D+
Sbjct: 495 TEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEESLGKCCLVTEEIERDL 554
Query: 150 SHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWA 209
+L +H F G+ L +L AY+ NP++GY + ++ +T++LLL EE+AFW
Sbjct: 555 HRSLPEHPAFQNETGIAA--LRRVLTAYAHRNPKIGYCQSMNILTSVLLLYTKEEEAFWL 612
Query: 210 L 210
L
Sbjct: 613 L 613
>gi|38570103 TBC1 domain family, member 8B (with GRAM domain)
isoform b [Homo sapiens]
Length = 632
Score = 65.1 bits (157), Expect = 6e-11
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 51 IVHEMELPRVSALEVKQRRKESKRTNKWQKMLADWTKYRS---TKKLSQRVYKVIPLAVR 107
+ H L +++ +K++ KE W+ + A+ + S TKK V + IP +R
Sbjct: 438 VFHPQNLETLNSKMLKEKMKEQS----WKILFAECGRGVSMFRTKKTRDLVVRGIPETLR 493
Query: 108 GRAWSLLLDIDRIKSQNPGKYKVMKEKGKRSSRII-HCIQLDVSHTLQKHMMFIQRFGVK 166
G W L + NP Y + E+ + + I+ D+ +L +H F G+
Sbjct: 494 GELWMLFSGAVNDMATNPDYYTEVVEQSLGTCNLATEEIERDLRRSLPEHPAFQSDTGIS 553
Query: 167 QQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWAL 210
L +L AY+ NP++GY + ++ +T++LLL EE+AFW L
Sbjct: 554 A--LRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLL 595
>gi|38570101 TBC1 domain family, member 8B (with GRAM domain)
isoform a [Homo sapiens]
Length = 1120
Score = 65.1 bits (157), Expect = 6e-11
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 51 IVHEMELPRVSALEVKQRRKESKRTNKWQKMLADWTKYRS---TKKLSQRVYKVIPLAVR 107
+ H L +++ +K++ KE W+ + A+ + S TKK V + IP +R
Sbjct: 438 VFHPQNLETLNSKMLKEKMKEQS----WKILFAECGRGVSMFRTKKTRDLVVRGIPETLR 493
Query: 108 GRAWSLLLDIDRIKSQNPGKYKVMKEKGKRSSRII-HCIQLDVSHTLQKHMMFIQRFGVK 166
G W L + NP Y + E+ + + I+ D+ +L +H F G+
Sbjct: 494 GELWMLFSGAVNDMATNPDYYTEVVEQSLGTCNLATEEIERDLRRSLPEHPAFQSDTGIS 553
Query: 167 QQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWAL 210
L +L AY+ NP++GY + ++ +T++LLL EE+AFW L
Sbjct: 554 A--LRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLL 595
>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
Length = 1069
Score = 64.7 bits (156), Expect = 7e-11
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 78 WQKMLADWTKYRST--KKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVM--KE 133
W ++L+ W + K+LS V +P A+RG W LL KY+++ KE
Sbjct: 541 WGELLSKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHN-NDHLVEKYRILITKE 599
Query: 134 KGKRSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRI 193
+ S+ I D++ T H F G Q L I AYS Y+ E+GY + S +
Sbjct: 600 SPQDSA-----ITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFL 654
Query: 194 TAILLLCLPEEDAFWALTQLL 214
A+LLL +PEE AF L +++
Sbjct: 655 AAVLLLHMPEEQAFSVLVKIM 675
>gi|118722351 growth hormone regulated TBC protein 1 [Homo sapiens]
Length = 336
Score = 64.7 bits (156), Expect = 7e-11
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)
Query: 72 SKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVM 131
++R KW ++L RS + + + V K +PL R R W +L QNPG Y +
Sbjct: 40 TRRAIKWSRLLQGGGVPRS-RTVKRYVRKGVPLEHRARVWMVLSGAQAQMDQNPGYYHQL 98
Query: 132 KEKGKRSSRIIHCIQLDVSHTLQKHMMFIQRFG-VKQQELCDILVAYSAYNPEVGYHRDL 190
+ G+R+ R+ I+ D++ T ++ F + Q+ L ++L+AY +N VGY + +
Sbjct: 99 LQ-GERNPRLEDAIRTDLNRTFPDNVKFRKTTDPCLQRTLYNVLLAYGHHNQGVGYCQGM 157
Query: 191 SRITAILLLCL-PEEDAFWALTQLLAGERHSLWYSTAQI 228
+ I L+L EE++FW L L G +YS A +
Sbjct: 158 NFIAGYLILITNNEEESFW-LLDALVGRILPDYYSPAML 195
>gi|164565381 TBC1 domain family, member 14 isoform b [Homo sapiens]
Length = 413
Score = 62.4 bits (150), Expect = 4e-10
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 59 RVSALEVKQRRKES--KRTNKWQ-KMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSL-- 113
R LE + R +ES W ++L +W ++K+ ++ IP +VRG+ WSL
Sbjct: 76 RKKQLEERCRVEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAI 135
Query: 114 ---------LLDI------DRIKSQNPGKYKVMKEKGKRSSR----IIHCIQLDVSHTLQ 154
L DI +R +S + G +V E S+ + I+LD+S T
Sbjct: 136 GNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFP 195
Query: 155 KHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWALTQLL 214
+F Q+ G L IL AY+ Y P+VGY + +S I A+L+L L DAF A + LL
Sbjct: 196 NLCIF-QQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLL 254
>gi|164565368 TBC1 domain family, member 14 isoform a [Homo sapiens]
Length = 693
Score = 62.4 bits (150), Expect = 4e-10
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 59 RVSALEVKQRRKES--KRTNKWQ-KMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSL-- 113
R LE + R +ES W ++L +W ++K+ ++ IP +VRG+ WSL
Sbjct: 356 RKKQLEERCRVEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAI 415
Query: 114 ---------LLDI------DRIKSQNPGKYKVMKEKGKRSSR----IIHCIQLDVSHTLQ 154
L DI +R +S + G +V E S+ + I+LD+S T
Sbjct: 416 GNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFP 475
Query: 155 KHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWALTQLL 214
+F Q+ G L IL AY+ Y P+VGY + +S I A+L+L L DAF A + LL
Sbjct: 476 NLCIF-QQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLL 534
>gi|164565366 TBC1 domain family, member 14 isoform a [Homo sapiens]
Length = 693
Score = 62.4 bits (150), Expect = 4e-10
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
Query: 59 RVSALEVKQRRKES--KRTNKWQ-KMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSL-- 113
R LE + R +ES W ++L +W ++K+ ++ IP +VRG+ WSL
Sbjct: 356 RKKQLEERCRVEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAI 415
Query: 114 ---------LLDI------DRIKSQNPGKYKVMKEKGKRSSR----IIHCIQLDVSHTLQ 154
L DI +R +S + G +V E S+ + I+LD+S T
Sbjct: 416 GNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFP 475
Query: 155 KHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWALTQLL 214
+F Q+ G L IL AY+ Y P+VGY + +S I A+L+L L DAF A + LL
Sbjct: 476 NLCIF-QQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLL 534
>gi|45597177 TBC1 domain family, member 9B (with GRAM domain)
isoform b [Homo sapiens]
Length = 1233
Score = 61.6 bits (148), Expect = 6e-10
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 70 KESKRTNKWQKMLADWTK----YRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNP 125
KE + W ++ + YR T K V K IP ++RG W L +P
Sbjct: 474 KEKMKEESWHIHFFEYGRGVCMYR-TAKTRALVLKGIPESLRGELWLLFSGAWNEMVTHP 532
Query: 126 GKYKVMKEKGK-RSSRIIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEV 184
G Y + EK + S I+ D+ ++ +H F G+ L +L AY+ NP +
Sbjct: 533 GYYAELVEKSTGKYSLATEEIERDLHRSMPEHPAFQNELGIAA--LRRVLTAYAFRNPTI 590
Query: 185 GYHRDLSRITAILLLCLPEEDAFWALTQL 213
GY + ++ +T++LLL EE+AFW L L
Sbjct: 591 GYCQAMNIVTSVLLLYGSEEEAFWLLVAL 619
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,727,946
Number of Sequences: 37866
Number of extensions: 397360
Number of successful extensions: 895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 67
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.