Guide to the Human Genome
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Name: RABGAP1 Sequence: fasta or formatted (1069aa) NCBI GI: 164519084
Description:

RAB GTPase activating protein 1

Referenced in:

Centrosome
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         55           2
 C cysteine            2.1         22           1
 D aspartate           6.5         70           2
 E glutamate          10.2        109           3
 F phenylalanine       4.0         43           2
 G glycine             4.4         47           2
 H histidine           1.7         18           2
 I isoleucine          4.6         49           2
 K lysine              8.0         85           2
 L leucine            10.9        116           3
 M methionine          2.0         21           2
 N asparagine          3.9         42           2
 P proline             4.0         43           2
 Q glutamine           5.3         57           2
 R arginine            5.1         55           2
 S serine              8.2         88           2
 T threonine           5.0         53           2
 V valine              6.0         64           2
 W tryptophan          0.7          7           1
 Y tyrosine            2.3         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB GTPase activating protein 1 
RABGAP1L              0.488   RAB GTPase activating protein 1-like isoform A [Homo...
EVI5                  0.116   ecotropic viral integration site 5 
EVI5L                 0.115   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.111   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D4                0.099   TBC1 domain family, member 4 
TBC1D1                0.091   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D10A              0.055   TBC1 domain family, member 10A 
TBC1D10B              0.054   TBC1 domain family, member 10B 
TBC1D10C              0.052   TBC1 domain family, member 10C 
USP6NL                0.048   USP6 N-terminal like isoform 1 
USP6NL                0.048   USP6 N-terminal like isoform 2 
TBC1D8B               0.042   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D9                0.042   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D12               0.040   TBC1 domain family, member 12 
TBC1D8                0.040   TBC1 domain family, member 8 
TBC1D14               0.039   TBC1 domain family, member 14 isoform b 
TBC1D14               0.039   TBC1 domain family, member 14 isoform a 
TBC1D14               0.039   TBC1 domain family, member 14 isoform a 
SGSM3                 0.039   small G protein signaling modulator 3 
TBC1D2B               0.039   TBC1 domain family, member 2B isoform a 
TBC1D9B               0.038   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.038   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D2B               0.038   TBC1 domain family, member 2B isoform b 
GRTP1                 0.031   growth hormone regulated TBC protein 1 
TBC1D2                0.027   TBC1 domain family, member 2 
TBCKL                 0.026   TBC domain-containing protein kinase-like 
TBC1D8B               0.025   TBC1 domain family, member 8B (with GRAM domain) iso...
USP6                  0.024   ubiquitin specific protease 6 
TBC1D3H               0.024   TBC1 domain family, member 3H 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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