Guide to the Human Genome
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Name: TBC1D3D Sequence: fasta or formatted (549aa) NCBI GI: 183583563
Description:

TBC1 domain family, member 3D

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         37           2
 C cysteine            2.4         13           1
 D aspartate           5.5         30           1
 E glutamate           6.0         33           2
 F phenylalanine       3.1         17           2
 G glycine             7.7         42           2
 H histidine           2.7         15           1
 I isoleucine          4.0         22           2
 K lysine              5.6         31           2
 L leucine             8.7         48           2
 M methionine          2.2         12           1
 N asparagine          1.8         10           3
 P proline             8.6         47           3
 Q glutamine           5.8         32           2
 R arginine            8.6         47           2
 S serine              6.9         38           2
 T threonine           4.0         22           1
 V valine              4.6         25           2
 W tryptophan          2.7         15           2
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 3D 
TBC1D3                0.999   TBC1 domain family, member 3 
TBC1D3E               0.999   TBC1 domain family, member 3E 
TBC1D3G               0.999   TBC1 domain family, member 3G 
TBC1D3H               0.997   TBC1 domain family, member 3H 
TBC1D3F               0.996   TBC1 domain family, member 3F 
TBC1D3C               0.996   TBC1 domain family member 3C 
TBC1D3B               0.991   TBC1 domain family, member 3B 
USP6                  0.729   ubiquitin specific protease 6 
LOC100134348          0.417   PREDICTED: similar to TBC1 domain family, member 3 ...
USP6NL                0.195   USP6 N-terminal like isoform 1 
USP6NL                0.195   USP6 N-terminal like isoform 2 
TBC1D26               0.187   TBC1 domain family, member 26 
LOC100287742          0.143   PREDICTED: hypothetical protein XP_002343595 
LOC100293000          0.138   PREDICTED: similar to hCG1991532 
LOC100292664          0.128   PREDICTED: similar to TBC1 domain family, member 28...
TBC1D28               0.128   TBC1 domain family, member 28 
LOC100290964          0.114   PREDICTED: hypothetical protein XP_002347802 
TBC1D27               0.093   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.093   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.093   PREDICTED: TBC1 domain family, member 27 
TBC1D10B              0.072   TBC1 domain family, member 10B 
TBC1D10A              0.071   TBC1 domain family, member 10A 
TBC1D10C              0.070   TBC1 domain family, member 10C 
EVI5                  0.055   ecotropic viral integration site 5 
EVI5L                 0.052   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.052   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D2B               0.052   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.052   TBC1 domain family, member 2B isoform b 
TBC1D29               0.052   TBC1 domain family, member 29 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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