Guide to the Human Genome
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Name: TBC1D8B Sequence: fasta or formatted (632aa) NCBI GI: 38570103
Description:

TBC1 domain family, member 8B (with GRAM domain) isoform b

Referenced in:

Rab

Other entries for this name:
alt prot [1120aa] TBC1 domain family, member 8B (with GRAM domain) isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         32           2
 C cysteine            2.7         17           1
 D aspartate           4.3         27           2
 E glutamate           8.9         56           3
 F phenylalanine       5.4         34           2
 G glycine             5.4         34           4
 H histidine           2.2         14           1
 I isoleucine          5.5         35           2
 K lysine              6.3         40           2
 L leucine            11.1         70           3
 M methionine          2.4         15           1
 N asparagine          4.6         29           1
 P proline             3.2         20           1
 Q glutamine           3.8         24           1
 R arginine            5.4         34           3
 S serine              7.6         48           2
 T threonine           5.5         35           1
 V valine              5.7         36           2
 W tryptophan          1.7         11           1
 Y tyrosine            3.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 8B (with GRAM domain) iso... 
TBC1D8B               0.970   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D8                0.545   TBC1 domain family, member 8 
TBC1D9                0.524   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D9B               0.516   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.516   TBC1 domain family, member 9B (with GRAM domain) iso...
SGSM3                 0.071   small G protein signaling modulator 3 
TBC1D2B               0.060   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.060   TBC1 domain family, member 2B isoform b 
GRTP1                 0.055   growth hormone regulated TBC protein 1 
TBC1D10A              0.053   TBC1 domain family, member 10A 
TBC1D10C              0.051   TBC1 domain family, member 10C 
TBC1D10B              0.048   TBC1 domain family, member 10B 
USP6NL                0.045   USP6 N-terminal like isoform 1 
USP6NL                0.045   USP6 N-terminal like isoform 2 
TBC1D2                0.044   TBC1 domain family, member 2 
RABGAP1               0.042   RAB GTPase activating protein 1 
RABGAP1L              0.038   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D3H               0.037   TBC1 domain family, member 3H 
USP6                  0.037   ubiquitin specific protease 6 
TBC1D3C               0.037   TBC1 domain family member 3C 
TBC1D3G               0.037   TBC1 domain family, member 3G 
TBC1D3F               0.037   TBC1 domain family, member 3F 
TBC1D3B               0.037   TBC1 domain family, member 3B 
EVI5                  0.036   ecotropic viral integration site 5 
TBC1D3                0.036   TBC1 domain family, member 3 
TBC1D3E               0.036   TBC1 domain family, member 3E 
TBC1D3D               0.036   TBC1 domain family, member 3D 
EVI5L                 0.034   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.034   ecotropic viral integration site 5-like isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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