Guide to the Human Genome
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Name: USP6NL Sequence: fasta or formatted (845aa) NCBI GI: 122937432
Description:

USP6 N-terminal like isoform 2

Referenced in:

Rab

Other entries for this name:
alt prot [828aa] USP6 N-terminal like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         58           3
 C cysteine            0.4          3           1
 D aspartate           4.9         41           2
 E glutamate           7.3         62           3
 F phenylalanine       4.0         34           3
 G glycine             5.7         48           2
 H histidine           3.7         31           2
 I isoleucine          2.8         24           2
 K lysine              6.9         58           2
 L leucine             8.4         71           3
 M methionine          1.8         15           1
 N asparagine          3.2         27           1
 P proline             8.5         72           4
 Q glutamine           4.6         39           2
 R arginine            6.7         57           2
 S serine              9.3         79           3
 T threonine           4.3         36           2
 V valine              5.1         43           2
 W tryptophan          1.3         11           1
 Y tyrosine            4.3         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   USP6 N-terminal like isoform 2 
USP6NL                0.979   USP6 N-terminal like isoform 1 
USP6                  0.140   ubiquitin specific protease 6 
TBC1D3                0.129   TBC1 domain family, member 3 
TBC1D3E               0.129   TBC1 domain family, member 3E 
TBC1D3C               0.129   TBC1 domain family member 3C 
TBC1D3D               0.129   TBC1 domain family, member 3D 
TBC1D3F               0.128   TBC1 domain family, member 3F 
TBC1D3B               0.128   TBC1 domain family, member 3B 
TBC1D3H               0.128   TBC1 domain family, member 3H 
TBC1D3G               0.128   TBC1 domain family, member 3G 
TBC1D26               0.090   TBC1 domain family, member 26 
EVI5                  0.074   ecotropic viral integration site 5 
EVI5L                 0.071   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.071   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D10B              0.069   TBC1 domain family, member 10B 
TBC1D10A              0.065   TBC1 domain family, member 10A 
LOC100292664          0.059   PREDICTED: similar to TBC1 domain family, member 28...
TBC1D10C              0.059   TBC1 domain family, member 10C 
TBC1D27               0.059   PREDICTED: TBC1 domain family, member 27 
TBC1D28               0.059   TBC1 domain family, member 28 
TBC1D27               0.059   PREDICTED: TBC1 domain family, member 27 
RABGAP1               0.059   RAB GTPase activating protein 1 
TBC1D27               0.057   PREDICTED: TBC1 domain family, member 27 
TBC1D1                0.057   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
LOC100134348          0.056   PREDICTED: similar to TBC1 domain family, member 3 ...
RABGAP1L              0.053   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D12               0.050   TBC1 domain family, member 12 
TBC1D4                0.050   TBC1 domain family, member 4 
GRTP1                 0.048   growth hormone regulated TBC protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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