Guide to the Human Genome
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Name: GRTP1 Sequence: fasta or formatted (336aa) NCBI GI: 118722351
Description:

growth hormone regulated TBC protein 1

Referenced in:

Growth Hormone and Related Hormones
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         21           2
 C cysteine            2.1          7           1
 D aspartate           4.8         16           2
 E glutamate           6.0         20           3
 F phenylalanine       4.8         16           2
 G glycine             6.5         22           3
 H histidine           1.8          6           2
 I isoleucine          5.1         17           2
 K lysine              4.5         15           1
 L leucine            12.5         42           2
 M methionine          2.7          9           1
 N asparagine          3.0         10           2
 P proline             4.8         16           1
 Q glutamine           4.8         16           1
 R arginine            8.3         28           2
 S serine              4.8         16           2
 T threonine           5.1         17           2
 V valine              7.1         24           1
 W tryptophan          1.8          6           1
 Y tyrosine            3.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth hormone regulated TBC protein 1 
TBC1D9                0.196   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D9B               0.193   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.193   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D8                0.190   TBC1 domain family, member 8 
TBC1D10C              0.178   TBC1 domain family, member 10C 
TBC1D2B               0.176   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.176   TBC1 domain family, member 2B isoform b 
TBC1D8B               0.175   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D2                0.173   TBC1 domain family, member 2 
TBC1D10B              0.173   TBC1 domain family, member 10B 
TBC1D10A              0.170   TBC1 domain family, member 10A 
SGSM3                 0.161   small G protein signaling modulator 3 
TBC1D1                0.128   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
USP6NL                0.125   USP6 N-terminal like isoform 1 
USP6NL                0.125   USP6 N-terminal like isoform 2 
EVI5                  0.125   ecotropic viral integration site 5 
EVI5L                 0.122   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.122   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D4                0.116   TBC1 domain family, member 4 
RABGAP1L              0.116   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D30               0.112   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.112   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.112   PREDICTED: TBC1 domain family, member 30 
TBC1D8B               0.105   TBC1 domain family, member 8B (with GRAM domain) iso...
RABGAP1               0.097   RAB GTPase activating protein 1 
USP6                  0.088   ubiquitin specific protease 6 
TBC1D3                0.076   TBC1 domain family, member 3 
TBC1D3E               0.076   TBC1 domain family, member 3E 
TBC1D3D               0.076   TBC1 domain family, member 3D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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