Guide to the Human Genome
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Name: TBC1D10A Sequence: fasta or formatted (508aa) NCBI GI: 13994322
Description:

TBC1 domain family, member 10A

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         43           3
 C cysteine            1.8          9           1
 D aspartate           4.3         22           1
 E glutamate           7.9         40           2
 F phenylalanine       3.1         16           2
 G glycine             6.7         34           2
 H histidine           2.6         13           2
 I isoleucine          3.5         18           2
 K lysine              6.9         35           2
 L leucine            10.6         54           2
 M methionine          2.6         13           1
 N asparagine          1.4          7           2
 P proline             8.5         43           2
 Q glutamine           7.3         37           2
 R arginine            6.5         33           2
 S serine              6.9         35           2
 T threonine           2.2         11           2
 V valine              4.9         25           2
 W tryptophan          2.0         10           1
 Y tyrosine            2.0         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 10A 
TBC1D10B              0.543   TBC1 domain family, member 10B 
TBC1D10C              0.369   TBC1 domain family, member 10C 
RABGAP1L              0.128   RAB GTPase activating protein 1-like isoform A [Homo...
RABGAP1               0.114   RAB GTPase activating protein 1 
GRTP1                 0.111   growth hormone regulated TBC protein 1 
USP6NL                0.110   USP6 N-terminal like isoform 1 
USP6NL                0.110   USP6 N-terminal like isoform 2 
EVI5L                 0.109   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.109   ecotropic viral integration site 5-like isoform 2 [H...
EVI5                  0.103   ecotropic viral integration site 5 
TBC1D8                0.102   TBC1 domain family, member 8 
TBC1D9B               0.101   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.101   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D8B               0.101   TBC1 domain family, member 8B (with GRAM domain) iso...
SGSM3                 0.100   small G protein signaling modulator 3 
TBC1D9                0.099   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D2B               0.096   TBC1 domain family, member 2B isoform a 
TBC1D4                0.091   TBC1 domain family, member 4 
TBC1D2B               0.091   TBC1 domain family, member 2B isoform b 
TBC1D1                0.087   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
USP6                  0.084   ubiquitin specific protease 6 
TBC1D2                0.083   TBC1 domain family, member 2 
TBC1D3H               0.079   TBC1 domain family, member 3H 
TBC1D3F               0.079   TBC1 domain family, member 3F 
TBC1D3G               0.079   TBC1 domain family, member 3G 
TBC1D3                0.079   TBC1 domain family, member 3 
TBC1D3E               0.079   TBC1 domain family, member 3E 
TBC1D3D               0.079   TBC1 domain family, member 3D 
TBC1D3C               0.078   TBC1 domain family member 3C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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