Guide to the Human Genome
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Name: TBC1D3C Sequence: fasta or formatted (549aa) NCBI GI: 90577185
Description:

TBC1 domain family member 3C

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         37           2
 C cysteine            2.4         13           1
 D aspartate           5.5         30           1
 E glutamate           6.0         33           2
 F phenylalanine       3.1         17           2
 G glycine             7.7         42           2
 H histidine           2.7         15           1
 I isoleucine          4.0         22           2
 K lysine              5.6         31           2
 L leucine             8.7         48           2
 M methionine          2.4         13           1
 N asparagine          1.8         10           3
 P proline             8.4         46           3
 Q glutamine           5.8         32           2
 R arginine            8.6         47           2
 S serine              7.1         39           2
 T threonine           4.0         22           1
 V valine              4.4         24           2
 W tryptophan          2.7         15           2
 Y tyrosine            2.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family member 3C 
TBC1D3G               0.998   TBC1 domain family, member 3G 
TBC1D3H               0.996   TBC1 domain family, member 3H 
TBC1D3D               0.996   TBC1 domain family, member 3D 
TBC1D3                0.995   TBC1 domain family, member 3 
TBC1D3E               0.995   TBC1 domain family, member 3E 
TBC1D3B               0.995   TBC1 domain family, member 3B 
TBC1D3F               0.992   TBC1 domain family, member 3F 
USP6                  0.725   ubiquitin specific protease 6 
LOC100134348          0.417   PREDICTED: similar to TBC1 domain family, member 3 ...
USP6NL                0.195   USP6 N-terminal like isoform 1 
USP6NL                0.195   USP6 N-terminal like isoform 2 
TBC1D26               0.189   TBC1 domain family, member 26 
LOC100287742          0.143   PREDICTED: hypothetical protein XP_002343595 
LOC100293000          0.138   PREDICTED: similar to hCG1991532 
LOC100292664          0.130   PREDICTED: similar to TBC1 domain family, member 28...
TBC1D28               0.130   TBC1 domain family, member 28 
LOC100290964          0.114   PREDICTED: hypothetical protein XP_002347802 
TBC1D27               0.091   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.091   PREDICTED: TBC1 domain family, member 27 
TBC1D27               0.091   PREDICTED: TBC1 domain family, member 27 
TBC1D10C              0.071   TBC1 domain family, member 10C 
TBC1D10B              0.071   TBC1 domain family, member 10B 
TBC1D10A              0.070   TBC1 domain family, member 10A 
EVI5                  0.053   ecotropic viral integration site 5 
TBC1D29               0.052   TBC1 domain family, member 29 
TBC1D2B               0.051   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.051   TBC1 domain family, member 2B isoform b 
EVI5L                 0.051   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.051   ecotropic viral integration site 5-like isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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