Guide to the Human Genome
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Search of human proteins with 148226288

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148226288 lipocalin-like 1 [Homo sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148226288 lipocalin-like 1 [Homo sapiens]                          350   2e-97
gi|42714611 lipocalin 15 [Homo sapiens]                                58   4e-09
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       38   0.004
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    38   0.004
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    38   0.004
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    38   0.004
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    38   0.004
gi|7657405 odorant binding protein 2A precursor [Homo sapiens]         33   0.14 
gi|48717447 lipocalin 9 [Homo sapiens]                                 32   0.25 
gi|225690502 junctophilin 4 [Homo sapiens]                             32   0.25 
gi|225690500 junctophilin 4 [Homo sapiens]                             32   0.25 
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase...    31   0.55 
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H...    30   0.72 
gi|167830477 milk fat globule-EGF factor 8 protein isoform b [Ho...    30   1.2  
gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Ho...    30   1.2  
gi|15718767 TRAAK [Homo sapiens]                                       30   1.2  
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,...    29   1.6  
gi|239757644 PREDICTED: hypothetical protein [Homo sapiens]            29   1.6  
gi|111955326 MLX interacting protein [Homo sapiens]                    29   1.6  
gi|39573716 lipocalin 6 [Homo sapiens]                                 29   1.6  
gi|4502119 amine oxidase, copper containing 3 precursor [Homo sa...    29   2.1  
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]    29   2.1  
gi|169212010 PREDICTED: hypothetical protein [Homo sapiens]            28   2.7  
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap...    28   2.7  
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    28   2.7  
gi|166197660 complement component 8, gamma polypeptide [Homo sap...    28   3.6  
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         28   3.6  
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             28   4.6  
gi|145309320 forkhead box Q1 [Homo sapiens]                            28   4.6  
gi|124249376 proline rich 21 [Homo sapiens]                            28   4.6  

>gi|148226288 lipocalin-like 1 [Homo sapiens]
          Length = 164

 Score =  350 bits (899), Expect = 2e-97
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPG 60
           MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPG
Sbjct: 1   MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPG 60

Query: 61  QFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRPRHPRFGSGM 120
           QFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRPRHPRFGSGM
Sbjct: 61  QFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRPRHPRFGSGM 120

Query: 121 SPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPSL 164
           SPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPSL
Sbjct: 121 SPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPSL 164


>gi|42714611 lipocalin 15 [Homo sapiens]
          Length = 184

 Score = 57.8 bits (138), Expect = 4e-09
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 1   MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPG 60
           +V + SD + FL  KD + M+   + P   G L +   +P   G C ++D  + +    G
Sbjct: 39  VVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHMEFPGADG-CNQVDAEYLKVGSEG 97

Query: 61  QFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLY 102
            F  PA+   D+R+  +DY  FA+LY+     G  +  +QLY
Sbjct: 98  HFRVPALGYLDVRIVDTDYSSFAVLYIYKELEGALSTMVQLY 139


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  PR P    G  P+ L  P  H  GG    WC       PP PS P   PPAP
Sbjct: 59  GSAPRSPAPREGPPPV-LASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP 112


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  PR P    G  P+ L  P  H  GG    WC       PP PS P   PPAP
Sbjct: 42  GSAPRSPAPREGPPPV-LASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP 95


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  PR P    G  P+ L  P  H  GG    WC       PP PS P   PPAP
Sbjct: 50  GSAPRSPAPREGPPPV-LASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP 103


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  PR P    G  P+ L  P  H  GG    WC       PP PS P   PPAP
Sbjct: 42  GSAPRSPAPREGPPPV-LASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP 95


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  PR P    G  P+ L  P  H  GG    WC       PP PS P   PPAP
Sbjct: 50  GSAPRSPAPREGPPPV-LASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAP 103


>gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
          Length = 170

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 8   DQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPGQFSNPAM 67
           D+DF + +   K++ V VT LG G+L   F +      C +      +   PG+FS    
Sbjct: 37  DKDFPEDRRPRKVSPVKVTALGGGNLEATFTF-MREDRCIQKKILMRKTEEPGKFSAYGG 95

Query: 68  ALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRP 111
                         +     + R+GGLR      Y G+  GR P
Sbjct: 96  RKLIYLQELPGTDDYVFYCKDQRRGGLR------YMGKLVGRNP 133


>gi|48717447 lipocalin 9 [Homo sapiens]
          Length = 176

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 4   VVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPGQFS 63
           + SDD + +     +++ V  +  L NG L   F Y    G C  +     +    G++S
Sbjct: 42  MASDDLNRIKENGDLRVFVRNIEHLKNGSLIFDFEYMV-QGECVAVVVVCEKTEKNGEYS 100

Query: 64  NPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLY 102
                 + + V+ +DY+ F   +L+  + G     L LY
Sbjct: 101 INYEGQNTVAVSETDYRLFITFHLQNFRNGTETHTLALY 139


>gi|225690502 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 106 AAGRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPA 161
           A GRRPR    GS   PL    P ++  G T       P +P+ P  S   + PPA
Sbjct: 422 APGRRPRQDSEGSDTEPLDEDSPGVYENGLTPSEGS--PELPSSPASSRQPWRPPA 475


>gi|225690500 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 106 AAGRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPA 161
           A GRRPR    GS   PL    P ++  G T       P +P+ P  S   + PPA
Sbjct: 422 APGRRPRQDSEGSDTEPLDEDSPGVYENGLTPSEGS--PELPSSPASSRQPWRPPA 475


>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
           [Homo sapiens]
          Length = 456

 Score = 30.8 bits (68), Expect = 0.55
 Identities = 12/20 (60%), Positives = 12/20 (60%)

Query: 143 WPRVPAPPCPSLPLFAPPAP 162
           WP  P PP P  PL APP P
Sbjct: 4   WPAPPPPPPPPPPLAAPPPP 23


>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
           sapiens]
          Length = 425

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 103 GGRAAGRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           GG A   R R    G     L LH  F    GG        P  PAPP P+ P  + PAP
Sbjct: 350 GGGAGAERDR----GGASGFLTLHNAFPKEAGGGVTVTVTGP--PAPPAPAPPAPSAPAP 403


>gi|167830477 milk fat globule-EGF factor 8 protein isoform b [Homo
           sapiens]
          Length = 335

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 56  GAVPGQFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQW 98
           G   G  +N  +A S +RV F   QH+      + + G+ N W
Sbjct: 75  GLENGNIANSQIAASSVRVTFLGLQHWVPELARLNRAGMVNAW 117


>gi|167830475 milk fat globule-EGF factor 8 protein isoform a [Homo
           sapiens]
          Length = 387

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 56  GAVPGQFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQW 98
           G   G  +N  +A S +RV F   QH+      + + G+ N W
Sbjct: 75  GLENGNIANSQIAASSVRVTFLGLQHWVPELARLNRAGMVNAW 117


>gi|15718767 TRAAK [Homo sapiens]
          Length = 393

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 144 PRVPAPPCPSLPLFAPPAPS 163
           P +P PPCP+ PL  P +PS
Sbjct: 302 PLLPPPPCPAQPLGRPRSPS 321


>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
           member 1 isoform 1 [Homo sapiens]
          Length = 676

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 108 GRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPS 163
           GR P   R  +G++  C     L AEGG AG     P  P  P P+ P  +P AP+
Sbjct: 18  GRLPGARRGSAGLAKKCPFSLEL-AEGGPAGGALYAPIAPGAPGPAPPA-SPAAPA 71


>gi|239757644 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 101

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 138 GSWCLWPRVPAPPCPSLPLFAPPAP 162
           G  C W  +PAP CP+ P  A P P
Sbjct: 19  GQACRWEPIPAPQCPAAP--AGPTP 41


>gi|111955326 MLX interacting protein [Homo sapiens]
          Length = 919

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 116 FGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPP--CPSLPLFAPPAPSL 164
           FG    PL + QPFL        +  L    PAPP   P LPL  PPA +L
Sbjct: 415 FGPSEPPLSVPQPFL-----PVFTMPLLSPSPAPPPISPVLPLVPPPATAL 460


>gi|39573716 lipocalin 6 [Homo sapiens]
          Length = 163

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 1   MVGVVSDDQDFLDSKDTMKMA--VVLVTPLGN-GDLALKFGYPTPHGGCQKMDTTFTEGA 57
           ++ V S ++ F   KD   +   VV +TP  N   L+ + G     GGC +      +  
Sbjct: 37  VLAVASREKGFAMEKDMKNVVGVVVTLTPENNLRTLSSQHGL----GGCDQSVMDLIKRN 92

Query: 58  VPGQFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLY 102
               F NP++ + ++ V  ++++ +A+++ ++  G      ++LY
Sbjct: 93  SGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELY 137


>gi|4502119 amine oxidase, copper containing 3 precursor [Homo
           sapiens]
          Length = 763

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 133 EGGTAGSWCLWPRVPAPPCPSLPL-FAPPAP 162
           + GT GSW L  + P PP P+ PL F P  P
Sbjct: 293 DNGTGGSWSL--KSPVPPGPAPPLQFYPQGP 321


>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
          Length = 663

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 134 GGTAGSWCLWPRVPAPPCPSLPLFAPPAP 162
           GG++G+    P  PAPP P  P   PP P
Sbjct: 140 GGSSGAQPSAPPPPAPPLPPTPSPPPPPP 168


>gi|169212010 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 109 RRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP 160
           R  R PR GS    + + +      G  A  WC W    +  CPS   F  P
Sbjct: 13  RAARMPRAGSSAWWVAVRKQVCTRVGTCAACWCSWSTGRSTACPSWKDFWKP 64


>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
          Length = 1258

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 11/50 (22%)

Query: 112  RHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPA 161
            RHPR G G S            GGT       P  P PP P   +F PP+
Sbjct: 1030 RHPRVGEGSSSD-------EESGGTLPP----PDFPPPPLPDSAIFLPPS 1068


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 74  VAFSDYQHFALLYLEMRKGGLRNQWLQ---LYGGRAAGRRPRHPRFGSGMSPLCLHQPFL 130
           + FSD     ++ + M    +R+  LQ    Y  +    RP  PR GSG  P+   +  +
Sbjct: 783 INFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSGGEPVHEGRQPV 842

Query: 131 HAEGGTAGSWCLWPRVPAP-----PCPSLPLFAPPAP 162
           H +G  A         P P     PCP       P+P
Sbjct: 843 HRQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSP 879


>gi|166197660 complement component 8, gamma polypeptide [Homo
           sapiens]
          Length = 202

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 44  GGCQKMDTTFTEGAVPGQF---SNPAMALSDIRVAFSDYQHFALLYLE 88
           G C ++   + +  V G+F   +  A     + VA +DYQ FA+LYLE
Sbjct: 94  GICWQVRQLYGDTGVLGRFLLQARDARGAVHVVVAETDYQSFAVLYLE 141


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 111 PRHPRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPS 163
           P  P   SG  P   H       G T+GS    P  PAPP  S    AP  PS
Sbjct: 440 PPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASK---APVVPS 489


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 114  PRFGSGMSPLCLHQPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPPAPS 163
            P  G+G +      P L   G T      WP    PP P+    APP PS
Sbjct: 960  PTLGAGTTRSPGSPPTLRVHGDTGSPRKPWPE-RRPPRPAATRTAPPTPS 1008


>gi|145309320 forkhead box Q1 [Homo sapiens]
          Length = 403

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 138 GSWCLWPRVPAPPCPSLPLFAPPAP 162
           G+   W   P PP P+ P   P AP
Sbjct: 292 GTTLQWGAAPCPPLPAFPALLPAAP 316


>gi|124249376 proline rich 21 [Homo sapiens]
          Length = 389

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 116 FGSGMSPLCLH-QPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP 160
           F  G S + LH +PFLHA   TA   CL+   P+    S+PL   P
Sbjct: 139 FTHGPSSMPLHPRPFLHASSPTALPPCLFTHGPS----SMPLHPRP 180



 Score = 27.7 bits (60), Expect = 4.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 116 FGSGMSPLCLH-QPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP 160
           F  G S + LH +PFLHA   TA   CL+   P+    S+PL   P
Sbjct: 251 FTHGPSSMPLHPRPFLHASSPTALRPCLFTHGPS----SMPLHPRP 292



 Score = 27.3 bits (59), Expect = 6.1
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 113 HPR-FGSGMSPLCLH-QPFLHAEGGTAGSWCLWPRVPAPPCPSLPLFAPP 160
           HPR F    S + LH +PF+HA   TA   CL+   P+    S+PL   P
Sbjct: 79  HPRLFTHSPSSMPLHPRPFVHASSPTALRPCLFTHGPS----SMPLHPRP 124


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,976,508
Number of Sequences: 37866
Number of extensions: 417931
Number of successful extensions: 1914
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1865
Number of HSP's gapped (non-prelim): 71
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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