Guide to the Human Genome
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Name: JPH4 Sequence: fasta or formatted (628aa) NCBI GI: 225690500
Description:

junctophilin 4

Referenced in:

Muscle

Other entries for this name:
alt mRNA [628aa] junctophilin 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         66           3
 C cysteine            1.0          6           1
 D aspartate           4.3         27           2
 E glutamate           8.0         50           3
 F phenylalanine       1.9         12           2
 G glycine            16.1        101           2
 H histidine           1.4          9           1
 I isoleucine          0.6          4           1
 K lysine              2.7         17           1
 L leucine             8.4         53           3
 M methionine          0.8          5           1
 N asparagine          0.8          5           1
 P proline             8.9         56           4
 Q glutamine           3.5         22           2
 R arginine            9.1         57           2
 S serine              9.9         62           3
 T threonine           3.0         19           2
 V valine              4.3         27           2
 W tryptophan          2.1         13           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   junctophilin 4 
JPH4                  1.000   junctophilin 4 
JPH3                  0.343   junctophilin 3 
JPH2                  0.335   junctophilin 2 isoform 1 
JPH1                  0.325   junctophilin 1 
JPH2                  0.129   junctophilin 2 isoform 2 
ALS2CL                0.038   ALS2 C-terminal like isoform 1 
RSPH10B2              0.035   radial spoke head 10 homolog B2 
RSPH10B               0.035   radial spoke head 10 homolog B 
RSPH1                 0.032   testis-specific gene A2 
MORN3                 0.030   MORN repeat containing 3 
ALS2                  0.028   alsin isoform 1 
MORN1                 0.028   MORN repeat containing 1 
MORN4                 0.024   MORN repeat containing 4 
MORN4                 0.024   MORN repeat containing 4 
LMTK3                 0.022   lemur tyrosine kinase 3 
USP42                 0.020   ubiquitin specific peptidase 42 
SYN1                  0.019   synapsin I isoform Ia 
SYN1                  0.019   synapsin I isoform Ib 
HRNR                  0.019   hornerin 
CAST                  0.017   calpastatin isoform l 
CAST                  0.017   calpastatin isoform k 
CAST                  0.017   calpastatin isoform j 
CAST                  0.017   calpastatin isoform i 
CAST                  0.017   calpastatin isoform h 
CAST                  0.017   calpastatin isoform g 
CAST                  0.017   calpastatin isoform f 
CAST                  0.017   calpastatin isoform e 
CAST                  0.017   calpastatin isoform b 
CAST                  0.017   calpastatin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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