Guide to the Human Genome
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Name: LCN9 Sequence: fasta or formatted (176aa) NCBI GI: 48717447
Description:

lipocalin 9

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          8           2
 C cysteine            2.3          4           1
 D aspartate           4.5          8           2
 E glutamate           7.4         13           1
 F phenylalanine       4.5          8           1
 G glycine             5.7         10           1
 H histidine           2.8          5           1
 I isoleucine          5.1          9           2
 K lysine              4.0          7           1
 L leucine             9.7         17           4
 M methionine          2.8          5           1
 N asparagine          7.4         13           1
 P proline             3.4          6           2
 Q glutamine           3.4          6           1
 R arginine            5.7         10           1
 S serine              6.2         11           1
 T threonine           5.7         10           1
 V valine              8.0         14           4
 W tryptophan          1.1          2           1
 Y tyrosine            5.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lipocalin 9 
LOC100129193          0.304   PREDICTED: similar to hCG1795014 
LOC100129193          0.304   PREDICTED: similar to hCG1795014 
LOC100129193          0.304   PREDICTED: similar to hCG1795014 
PAEP                  0.080   glycodelin precursor 
PAEP                  0.080   glycodelin precursor 
LCN15                 0.074   lipocalin 15 
LCN1                  0.053   lipocalin 1 precursor 
OBP2B                 0.041   odorant binding protein 2B 
OBP2A                 0.029   odorant binding protein 2A precursor 
AMBP                  0.027   alpha-1-microglobulin/bikunin preproprotein 
LCNL1                 0.021   lipocalin-like 1 
TTN                   0.015   titin isoform novex-3 
TTN                   0.015   titin isoform N2-A 
TTN                   0.015   titin isoform novex-2 
TTN                   0.015   titin isoform novex-1 
TTN                   0.015   titin isoform N2-B 
RGPD3                 0.009   RANBP2-like and GRIP domain containing 3 
APOD                  0.009   apolipoprotein D precursor 
POMT2                 0.009   protein-O-mannosyltransferase 2 
GLCE                  0.006   D-glucuronyl C5-epimerase 
CAPN8                 0.006   calpain 8 
PIGL                  0.006   phosphatidylinositol glycan anchor biosynthesis, clas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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