Guide to the Human Genome
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Name: LOC100130850 Sequence: fasta or formatted (148aa) NCBI GI: 169212010
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         15           2
 C cysteine            6.1          9           1
 D aspartate           2.7          4           1
 E glutamate           1.4          2           1
 F phenylalanine       2.7          4           1
 G glycine             6.1          9           1
 H histidine           1.4          2           1
 I isoleucine          1.4          2           1
 K lysine              5.4          8           1
 L leucine             6.1          9           1
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             8.1         12           2
 Q glutamine           4.1          6           1
 R arginine           11.5         17           2
 S serine              6.1          9           2
 T threonine           7.4         11           1
 V valine              6.8         10           1
 W tryptophan          6.1          9           2
 Y tyrosine            4.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729199             0.023   PREDICTED: hypothetical protein 
TF                    0.020   transferrin 
LCNL1                 0.010   lipocalin-like 1 
MYOZ3                 0.010   myozenin 3 
MYOZ3                 0.010   myozenin 3 
SEMA5A                0.010   semaphorin 5A 
AMDHD2                0.007   amidohydrolase domain containing 2 isoform 2 
C9orf69               0.007   hypothetical protein LOC90120 
LOC100292982          0.007   PREDICTED: hypothetical protein 
LOC100289817          0.007   PREDICTED: hypothetical protein XP_002347376 
LOC100289240          0.007   PREDICTED: hypothetical protein XP_002343214 
UNC5B                 0.007   unc-5 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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