Guide to the Human Genome
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Name: C8G Sequence: fasta or formatted (202aa) NCBI GI: 166197660
Description:

complement component 8, gamma polypeptide

Referenced in:

Complement
Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         24           2
 C cysteine            1.5          3           1
 D aspartate           4.5          9           1
 E glutamate           4.5          9           1
 F phenylalanine       5.4         11           1
 G glycine             7.4         15           1
 H histidine           2.5          5           1
 I isoleucine          2.0          4           1
 K lysine              2.5          5           1
 L leucine            11.9         24           3
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline             5.0         10           2
 Q glutamine           8.4         17           2
 R arginine            7.4         15           2
 S serine              5.4         11           1
 T threonine           5.9         12           2
 V valine              8.4         17           3
 W tryptophan          1.0          2           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement component 8, gamma polypeptide 
LCN15                 0.111   lipocalin 15 
AMBP                  0.108   alpha-1-microglobulin/bikunin preproprotein 
PTGDS                 0.058   prostaglandin H2 D-isomerase 
LOC100129193          0.053   PREDICTED: similar to hCG1795014 
LOC100129193          0.053   PREDICTED: similar to hCG1795014 
LOC100129193          0.053   PREDICTED: similar to hCG1795014 
LCN2                  0.032   lipocalin 2 
RBP4                  0.018   retinol-binding protein 4, plasma precursor 
NBAS                  0.013   neuroblastoma-amplified protein 
TNXB                  0.013   tenascin XB isoform 1 precursor 
HBS1L                 0.011   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.011   Hsp70 subfamily B suppressor 1-like protein isoform 1...
LOC100292110          0.008   PREDICTED: hypothetical protein XP_002344814 
LOC100289241          0.008   PREDICTED: hypothetical protein 
LOC100289241          0.008   PREDICTED: hypothetical protein XP_002343345 
LCNL1                 0.008   lipocalin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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