Guide to the Human Genome
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Name: LOC100293109 Sequence: fasta or formatted (101aa) NCBI GI: 239757644
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          7           2
 C cysteine            4.0          4           1
 D aspartate           2.0          2           1
 E glutamate           3.0          3           1
 F phenylalanine       1.0          1           1
 G glycine            11.9         12           3
 H histidine           5.9          6           2
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine            13.9         14           2
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline            13.9         14           2
 Q glutamine           5.0          5           1
 R arginine           11.9         12           2
 S serine              5.9          6           1
 T threonine           4.0          4           1
 V valine              5.9          6           1
 W tryptophan          2.0          2           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC390595             0.036   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.036   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.036   PREDICTED: hypothetical protein 
CBLB                  0.031   Cas-Br-M (murine) ecotropic retroviral transforming ...
LOC100128081          0.031   PREDICTED: hypothetical protein 
PDE4D                 0.026   phosphodiesterase 4D isoform 1 
WDR62                 0.026   WD repeat domain 62 isoform 1 
WDR62                 0.026   WD repeat domain 62 isoform 2 
OGFR                  0.026   opioid growth factor receptor 
REC8                  0.026   REC8 homolog 
REC8                  0.026   REC8 homolog 
LOC100293124          0.020   PREDICTED: similar to patatin-like phospholipase do...
PNPLA2                0.020   patatin-like phospholipase domain containing 2 [Homo...
LCNL1                 0.020   lipocalin-like 1 
CASC3                 0.020   metastatic lymph node 51 
GP6                   0.020   glycoprotein VI (platelet) isoform 1 
GP6                   0.020   glycoprotein VI (platelet) isoform 2 
LOC728163             0.020   PREDICTED: hypothetical protein 
FHOD1                 0.020   formin homology 2 domain containing 1 
NCCRP1                0.020   non-specific cytotoxic cell receptor protein 1 homol...
KDM6B                 0.015   lysine (K)-specific demethylase 6B 
PTPN23                0.015   protein tyrosine phosphatase, non-receptor type 23 [...
DACT3                 0.015   thymus expressed gene 3-like 
OLFML2B               0.015   olfactomedin-like 2B 
NELL1                 0.015   nel-like 1 isoform 2 precursor 
NELL1                 0.015   nel-like 1 isoform 1 precursor 
LOC100292080          0.015   PREDICTED: hypothetical protein XP_002345493 
FOXD4L2               0.015   forkhead box D4-like 2 
FOXK1                 0.015   forkhead box K1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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