Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SFRS8 Sequence: fasta or formatted (951aa) NCBI GI: 23111062
Description:

splicing factor, arginine/serine-rich 8

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7        102           4
 C cysteine            0.7          7           1
 D aspartate           5.3         50           4
 E glutamate           9.9         94           4
 F phenylalanine       2.2         21           2
 G glycine             5.0         48           4
 H histidine           2.0         19           1
 I isoleucine          1.9         18           2
 K lysine              8.4         80           5
 L leucine             6.6         63           2
 M methionine          1.2         11           1
 N asparagine          2.3         22           1
 P proline             8.2         78           4
 Q glutamine           4.0         38           1
 R arginine            7.0         67           3
 S serine             11.1        106           4
 T threonine           4.9         47           5
 V valine              4.7         45           3
 W tryptophan          0.3          3           1
 Y tyrosine            3.4         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 8 
SRRM1                 0.039   serine/arginine repetitive matrix 1 
LOC100170229          0.037   hypothetical protein LOC100170229 
SFRS4                 0.036   splicing factor, arginine/serine-rich 4 
SRRM2                 0.036   splicing coactivator subunit SRm300 
SON                   0.031   SON DNA-binding protein isoform F 
SON                   0.031   SON DNA-binding protein isoform B 
NEFH                  0.030   neurofilament, heavy polypeptide 200kDa 
RSRC2                 0.030   arginine/serine-rich coiled-coil 2 isoform a 
RSRC1                 0.028   arginine/serine-rich coiled-coil 1 
SFRS6                 0.028   arginine/serine-rich splicing factor 6 
SFRS11                0.028   splicing factor, arginine/serine-rich 11 
SF3A1                 0.027   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
ZRANB2                0.027   zinc finger protein 265 isoform 1 
SF3A1                 0.027   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
PPIG                  0.026   peptidylprolyl isomerase G 
SFRS12                0.026   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.026   splicing factor, arginine/serine-rich 12 isoform b [...
SCAF1                 0.026   SR-related CTD-associated factor 1 
PRPF4B                0.026   serine/threonine-protein kinase PRP4K 
SR140                 0.026   U2-associated SR140 protein 
RSRC2                 0.026   arginine/serine-rich coiled-coil 2 isoform b 
PHRF1                 0.026   PHD and ring finger domains 1 
ZRANB2                0.025   zinc finger protein 265 isoform 2 
GPATCH8               0.025   G patch domain containing 8 
SFRS16                0.024   splicing factor, arginine/serine-rich 16 
KIAA1853              0.024   KIAA1853 protein 
NOLC1                 0.023   nucleolar and coiled-body phosphoprotein 1 
LUC7L2                0.023   LUC7-like 2 
CROP                  0.023   cisplatin resistance-associated overexpressed protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press