Guide to the Human Genome
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Name: WDR82 Sequence: fasta or formatted (313aa) NCBI GI: 147904340
Description:

WD repeat domain 82

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         15           2
 C cysteine            2.2          7           1
 D aspartate           8.3         26           3
 E glutamate           2.9          9           1
 F phenylalanine       6.7         21           1
 G glycine             7.0         22           2
 H histidine           2.2          7           1
 I isoleucine          6.4         20           1
 K lysine              7.3         23           2
 L leucine             7.7         24           1
 M methionine          2.9          9           1
 N asparagine          4.5         14           1
 P proline             3.8         12           1
 Q glutamine           1.9          6           1
 R arginine            4.2         13           1
 S serine              9.9         31           3
 T threonine           6.1         19           1
 V valine              6.4         20           2
 W tryptophan          1.3          4           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 82 
WDR5                  0.144   WD repeat domain 5 
WDR5                  0.144   WD repeat domain 5 
WDR5B                 0.144   WD repeat domain 5B 
FBXW7                 0.094   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.094   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.094   F-box and WD repeat domain containing 7 isoform 2 [H...
GNB2                  0.084   guanine nucleotide-binding protein, beta-2 subunit [...
WDR51A                0.084   WD repeat domain 51A isoform 3 
WDR51A                0.084   WD repeat domain 51A isoform 2 
WDR51A                0.084   WD repeat domain 51A isoform 1 
SPAG16                0.084   sperm associated antigen 16 isoform 1 
GNB4                  0.084   guanine nucleotide-binding protein, beta-4 subunit [...
WDR69                 0.083   WD repeat domain 69 
ATG16L1               0.081   APG16 autophagy 16-like isoform 1 
ATG16L1               0.081   APG16 autophagy 16-like isoform 2 
WDR38                 0.073   WD repeat domain 38 
GNB1                  0.073   guanine nucleotide-binding protein, beta-1 subunit [...
AHI1                  0.071   Abelson helper integration site 1 isoform b 
AHI1                  0.071   Abelson helper integration site 1 isoform a 
AHI1                  0.071   Abelson helper integration site 1 isoform a 
AHI1                  0.071   Abelson helper integration site 1 isoform a 
PAFAH1B1              0.071   platelet-activating factor acetylhydrolase, isoform I...
GNB5                  0.068   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.068   guanine nucleotide-binding protein, beta-5 subunit i...
TAF5                  0.068   TBP-associated factor 5 
MORG1                 0.068   mitogen-activated protein kinase organizer 1 
MORG1                 0.068   mitogen-activated protein kinase organizer 1 
TBL1XR1               0.068   transducin (beta)-like 1 X-linked receptor 1 
WDR61                 0.066   WD repeat domain 61 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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